Variant report

Variant	rs9321878
Chromosome Location	chr6:143207601-143207602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143207135..143210789-chr6:143217602..143220867,3	K562	blood:
2	chr6:143206175..143208270-chr6:143265788..143268264,2	MCF-7	breast:
3	chr6:143207135..143211249-chr6:143217082..143220867,4	K562	blood:
4	chr6:143206591..143209014-chr6:143209615..143211236,2	K562	blood:

Variant related genes	Relation type
ENSG00000010818	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13211716	0.87[ASN][1000 genomes]
rs198669	0.81[ASN][1000 genomes]
rs198670	0.81[ASN][1000 genomes]
rs198671	0.81[ASN][1000 genomes]
rs198673	0.81[ASN][1000 genomes]
rs198674	0.81[ASN][1000 genomes]
rs198676	0.81[ASN][1000 genomes]
rs198679	0.82[ASN][1000 genomes]
rs198680	0.82[ASN][1000 genomes]
rs2050311	0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4896599	0.85[ASN][1000 genomes]
rs67253362	0.86[ASN][1000 genomes]
rs6925325	0.83[ASN][1000 genomes]
rs8180684	0.87[ASN][1000 genomes]
rs9376710	0.86[ASN][1000 genomes]
rs9390025	0.86[ASN][1000 genomes]
rs9390026	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143205400-143208600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143205600-143208000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr6:143206000-143208800	Enhancers	HepG2	liver
4	chr6:143206600-143207800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:143206600-143208200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:143206600-143208800	Enhancers	Hela-S3	cervix
7	chr6:143206600-143209000	Enhancers	HUVEC	blood vessel
8	chr6:143206600-143221400	Weak transcription	Lung	lung
9	chr6:143206600-143239400	Weak transcription	Gastric	stomach
10	chr6:143206800-143207800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:143206800-143207800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:143206800-143207800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:143206800-143207800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:143206800-143207800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:143206800-143207800	Weak transcription	Dnd41	blood
16	chr6:143206800-143208000	Enhancers	Fetal Lung	lung
17	chr6:143206800-143208000	Enhancers	Rectal Smooth Muscle	rectum
18	chr6:143206800-143208200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:143206800-143208200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:143206800-143208200	Enhancers	Brain Cingulate Gyrus	brain
21	chr6:143206800-143208200	Enhancers	Brain Hippocampus Middle	brain
22	chr6:143206800-143208200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:143206800-143208200	Enhancers	Fetal Brain Male	brain
24	chr6:143206800-143208200	Enhancers	Fetal Intestine Large	intestine
25	chr6:143206800-143208200	Enhancers	Fetal Intestine Small	intestine
26	chr6:143206800-143208200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr6:143206800-143208200	Enhancers	HMEC	breast
28	chr6:143206800-143208200	Enhancers	HSMM	muscle
29	chr6:143206800-143208400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr6:143206800-143208400	Enhancers	Brain Substantia Nigra	brain
31	chr6:143206800-143208400	Enhancers	NH-A	brain
32	chr6:143206800-143208400	Enhancers	NHEK	skin
33	chr6:143206800-143208600	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr6:143206800-143208600	Enhancers	NHLF	lung
35	chr6:143206800-143208800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:143206800-143208800	Enhancers	Primary hematopoietic stem cells	blood
37	chr6:143206800-143208800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:143206800-143208800	Enhancers	Duodenum Mucosa	Duodenum
39	chr6:143206800-143208800	Weak transcription	Fetal Brain Female	brain
40	chr6:143206800-143208800	Enhancers	HSMMtube	muscle
41	chr6:143206800-143209200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:143206800-143209400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr6:143206800-143209600	Enhancers	Primary B cells from peripheral blood	blood
44	chr6:143206800-143210400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:143206800-143211000	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr6:143206800-143212600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:143206800-143212800	Weak transcription	Pancreas	Pancrea
48	chr6:143206800-143212800	Weak transcription	Right Ventricle	heart
49	chr6:143206800-143213000	Weak transcription	Left Ventricle	heart
50	chr6:143206800-143220000	Weak transcription	Ovary	ovary

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