Variant report

Variant	rs9376710
Chromosome Location	chr6:143193404-143193405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143192752..143194574-chr6:143196705..143198471,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1005294	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs107118	0.85[ASN][1000 genomes]
rs107119	0.85[ASN][1000 genomes]
rs13209704	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13211716	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13212496	0.83[EUR][1000 genomes]
rs198669	0.89[ASN][1000 genomes]
rs198670	0.89[ASN][1000 genomes]
rs198671	0.89[ASN][1000 genomes]
rs198673	0.89[ASN][1000 genomes]
rs198674	0.89[ASN][1000 genomes]
rs198676	0.89[ASN][1000 genomes]
rs198679	0.87[ASN][1000 genomes]
rs198680	0.87[ASN][1000 genomes]
rs2050311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28743065	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4896599	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5022324	0.84[ASN][1000 genomes]
rs67253362	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6925325	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs728035	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8180684	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321878	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs9390025	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390026	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9403408	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9496470	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9496471	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143179600-143195000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143179600-143195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:143185600-143195000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:143185600-143195000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:143185600-143195000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:143185800-143195800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:143187000-143195800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:143187200-143193600	Weak transcription	Esophagus	oesophagus
9	chr6:143187200-143194200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:143188000-143195200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:143188600-143206200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:143189400-143193600	Weak transcription	Ovary	ovary
13	chr6:143189400-143197400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:143189400-143198000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr6:143189400-143201400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:143189400-143205400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:143189400-143205800	Weak transcription	Fetal Stomach	stomach
18	chr6:143189600-143198400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:143189600-143204200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:143191200-143194400	Enhancers	Right Ventricle	heart
21	chr6:143191200-143196200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:143191200-143198800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr6:143191200-143205600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr6:143191400-143193600	Weak transcription	Right Atrium	heart
25	chr6:143191400-143194400	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr6:143191600-143195800	Weak transcription	Placenta	Placenta
27	chr6:143191600-143199600	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:143191800-143193600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:143191800-143194200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:143191800-143197800	Enhancers	Primary T cells from cord blood	blood
31	chr6:143192000-143193600	Enhancers	Dnd41	blood
32	chr6:143192000-143193600	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr6:143192000-143194000	Enhancers	NHEK	skin
34	chr6:143192000-143194200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:143192000-143194200	Enhancers	HepG2	liver
36	chr6:143192000-143194600	Enhancers	HMEC	breast
37	chr6:143192000-143195800	Weak transcription	Psoas Muscle	Psoas
38	chr6:143192200-143193600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr6:143192200-143193600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:143192200-143193800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:143192200-143193800	Enhancers	Liver	Liver
42	chr6:143192200-143194000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:143192200-143194000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:143192200-143194200	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr6:143192200-143194200	Enhancers	NH-A	brain
46	chr6:143192200-143196400	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr6:143192400-143194000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:143192400-143194000	Enhancers	NHDF-Ad	bronchial
49	chr6:143192400-143194200	Enhancers	Adipose Nuclei	Adipose
50	chr6:143192400-143194600	Enhancers	Fetal Intestine Small	intestine

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