The 2.0 version of rSNPBase

Variant report

Variant rs198671
Chromosome Location chr6:143192180-143192181
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143175600-143192200 Weak transcription Breast Myoepithelial Primary Cells Breast
2 chr6:143175600-143192800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr6:143176600-143192400 Weak transcription NHDF-Ad bronchial
4 chr6:143177000-143192200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr6:143178200-143192800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr6:143179600-143195000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr6:143179600-143195800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr6:143180600-143193000 Weak transcription Thymus Thymus
9 chr6:143182200-143192800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr6:143185600-143195000 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr6:143185600-143195000 Weak transcription H9 Cell Line embryonic stem cell
12 chr6:143185600-143195000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr6:143185800-143195800 Weak transcription iPS-18 Cell Line embryonic stem cell
14 chr6:143187000-143195800 Weak transcription iPS-15b Cell Line embryonic stem cell
15 chr6:143187200-143192800 Weak transcription Rectal Smooth Muscle rectum
16 chr6:143187200-143193600 Weak transcription Esophagus oesophagus
17 chr6:143187200-143194200 Enhancers Primary T killer naive cells fromperipheralblood blood
18 chr6:143187600-143193000 Weak transcription Gastric stomach
19 chr6:143188000-143195200 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr6:143188600-143206200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr6:143188800-143192800 Weak transcription Aorta Aorta
22 chr6:143189400-143192200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr6:143189400-143192200 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr6:143189400-143192200 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr6:143189400-143192400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr6:143189400-143192800 Weak transcription Colon Smooth Muscle Colon
27 chr6:143189400-143193000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr6:143189400-143193600 Weak transcription Ovary ovary
29 chr6:143189400-143197400 Enhancers Skeletal Muscle Female skeletal muscle
30 chr6:143189400-143198000 Enhancers Primary T regulatory cells fromperipheralblood blood
31 chr6:143189400-143201400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
32 chr6:143189400-143205400 Enhancers Primary T helper naive cells fromperipheralblood blood
33 chr6:143189400-143205800 Weak transcription Fetal Stomach stomach
34 chr6:143189600-143192400 Weak transcription Primary B cells from peripheral blood blood
35 chr6:143189600-143192400 Weak transcription Duodenum Mucosa Duodenum
36 chr6:143189600-143192400 Weak transcription Fetal Intestine Large intestine
37 chr6:143189600-143192400 Weak transcription Fetal Intestine Small intestine
38 chr6:143189600-143192800 Enhancers Primary T helper cells PMA-I stimulated --
39 chr6:143189600-143192800 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr6:143189600-143192800 Weak transcription Rectal Mucosa Donor 31 rectum
41 chr6:143189600-143192800 Weak transcription Stomach Mucosa stomach
42 chr6:143189600-143193000 Weak transcription Fetal Kidney kidney
43 chr6:143189600-143198400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
44 chr6:143189600-143204200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
45 chr6:143189800-143192200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr6:143189800-143192200 Weak transcription Muscle Satellite Cultured Cells --
47 chr6:143189800-143192200 Weak transcription Liver Liver
48 chr6:143189800-143192200 Weak transcription Brain Inferior Temporal Lobe brain
49 chr6:143189800-143192400 Weak transcription Primary B cells from cord blood blood
50 chr6:143189800-143192400 Weak transcription Small Intestine intestine

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Last update: Aug 31, 2015