Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs169239	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs187964	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs199181	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs199997	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs199998	0.81[AMR][1000 genomes]
rs199999	0.81[AMR][1000 genomes]
rs200002	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs200003	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs200005	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs200008	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs200009	0.83[EUR][1000 genomes]
rs200010	0.82[EUR][1000 genomes]
rs200011	0.83[EUR][1000 genomes]
rs200013	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs200014	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs200048	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs200052	0.81[AMR][1000 genomes]
rs200064	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs200068	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9763660	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032346	chr5:8522331-8747061	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537636	chr5:8522331-8747061	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033498	chr5:8554438-8702228	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv537637	chr5:8690735-8730509	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv881428	chr5:8697444-8715139	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv881307	chr5:8697444-8718172	Weak transcription Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8696800-8700400	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:8696800-8700800	Weak transcription	Fetal Stomach	stomach
3	chr5:8697600-8699600	Weak transcription	Fetal Lung	lung

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