Variant report
| Variant | rs200013 |
|---|---|
| Chromosome Location | chr5:8694523-8694524 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs169239 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs187964 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs199181 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs199997 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs199998 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs199999 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs200000 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs200001 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs200002 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs200003 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs200005 | 0.87[AMR][1000 genomes] |
| rs200006 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs200008 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs200009 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs200010 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs200011 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs200014 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs200048 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs200052 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs200064 | 0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs200068 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs200095 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4701817 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032346 | chr5:8522331-8747061 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv537636 | chr5:8522331-8747061 | Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1033498 | chr5:8554438-8702228 | Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv537637 | chr5:8690735-8730509 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:8693000-8697600 | Enhancers | Fetal Lung | lung |
