Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs169239	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs187964	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs199181	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs199997	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs199998	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs199999	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs200000	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs200001	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs200002	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs200003	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs200005	0.82[AMR][1000 genomes]
rs200006	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs200008	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs200009	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs200010	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs200011	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs200013	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs200014	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs200052	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs200064	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs200066	0.88[CHB][hapmap]
rs200068	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs200095	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4701817	0.94[ASN][1000 genomes]
rs9763660	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880933	chr5:8467174-8688962	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1032346	chr5:8522331-8747061	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537636	chr5:8522331-8747061	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1033498	chr5:8554438-8702228	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8685800-8687600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:8685800-8687600	Enhancers	Osteobl	bone
3	chr5:8686000-8687800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:8686400-8686800	Weak transcription	NHDF-Ad	bronchial
5	chr5:8686400-8687000	Active TSS	Aorta	Aorta

Quick Search: