Variant report

Variant	rs200506
Chromosome Location	chr13:30901905-30901906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30882921..30884448-chr13:30901661..30903319,2	K562	blood:
2	chr13:30898272..30900349-chr13:30900805..30902399,2	K562	blood:
3	chr13:30881592..30883659-chr13:30901595..30903819,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1099860	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs169331	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs185694	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952607	0.80[EUR][1000 genomes]
rs200505	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200512	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200514	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs202079	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs202082	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs202083	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs202098	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs202099	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs202101	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595449	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs609919	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs613291	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628483	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs639234	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs653221	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs653251	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672233	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846495	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846498	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs200506	KATNAL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
3	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
5	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
6	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
7	chr13:30889600-30902400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
9	chr13:30894200-30903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:30894800-30905400	Weak transcription	Brain Anterior Caudate	brain
11	chr13:30897200-30905600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:30898200-30903400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:30900000-30902400	Weak transcription	Dnd41	blood
14	chr13:30901000-30903800	Enhancers	Fetal Heart	heart
15	chr13:30901800-30905400	Weak transcription	Fetal Muscle Leg	muscle

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