Variant report

Variant	rs609919
Chromosome Location	chr13:30895904-30895905
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30880917..30883470-chr13:30895639..30898288,2	K562	blood:

Variant related genes	Relation type
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1099860	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1296549	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs169331	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs185694	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs200505	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs200506	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs200510	0.87[EUR][1000 genomes]
rs200511	0.88[EUR][1000 genomes]
rs200512	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs200514	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs202079	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs202082	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs202083	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs202098	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs202099	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs202101	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs595449	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs613291	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs628483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639234	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs653221	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs653251	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs672233	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs846495	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs846498	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs609919	KATNAL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:30882200-30896200	Weak transcription	Ovary	ovary
3	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
5	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr13:30884600-30896000	Enhancers	Fetal Heart	heart
7	chr13:30886000-30898400	Weak transcription	Lung	lung
8	chr13:30886800-30896800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
11	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
12	chr13:30889400-30899400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
14	chr13:30889600-30898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:30889600-30902400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr13:30892400-30896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:30892800-30896800	Weak transcription	Left Ventricle	heart
18	chr13:30892800-30897800	Weak transcription	Right Atrium	heart
19	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
20	chr13:30894200-30896800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr13:30894200-30897400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr13:30894200-30897400	Weak transcription	NHLF	lung
23	chr13:30894200-30897800	Weak transcription	Fetal Muscle Leg	muscle
24	chr13:30894200-30900200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr13:30894200-30903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr13:30894400-30896000	Enhancers	Fetal Intestine Large	intestine
27	chr13:30894600-30897600	Weak transcription	Brain Hippocampus Middle	brain
28	chr13:30894800-30896000	Enhancers	Fetal Intestine Small	intestine
29	chr13:30894800-30896800	Weak transcription	Aorta	Aorta
30	chr13:30894800-30905400	Weak transcription	Brain Anterior Caudate	brain
31	chr13:30895800-30896800	Weak transcription	K562	blood
32	chr13:30895800-30898000	Weak transcription	Brain Cingulate Gyrus	brain

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