Variant report

Variant	rs672233
Chromosome Location	chr13:30899601-30899602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30755392..30758007-chr13:30898113..30899995,2	K562	blood:
2	chr13:30898272..30900349-chr13:30900805..30902399,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1099860	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12874839	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs169331	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs185694	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952607	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs200505	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200506	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200511	0.81[EUR][1000 genomes]
rs200512	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200514	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs202079	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs202082	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs202083	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs202098	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs202099	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs202101	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595449	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs609919	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs613291	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628483	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs639234	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs653221	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs653251	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846495	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846498	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315003	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs672233	KATNAL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
3	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
6	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
7	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
8	chr13:30889600-30902400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
10	chr13:30894200-30900200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:30894200-30903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr13:30894800-30905400	Weak transcription	Brain Anterior Caudate	brain
13	chr13:30897200-30905600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr13:30898200-30903400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:30899600-30899800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:30899600-30899800	Enhancers	Fetal Heart	heart
17	chr13:30899600-30900000	Enhancers	Dnd41	blood
18	chr13:30899600-30900400	Enhancers	GM12878-XiMat	blood

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