Variant report

Variant	rs202101
Chromosome Location	chr13:30897337-30897338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30880917..30883470-chr13:30895639..30898288,2	K562	blood:
2	chr13:30897317..30899409-chr13:30902997..30905720,2	K562	blood:

Variant related genes	Relation type
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1099860	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs169331	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs185694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952607	0.89[CEU][hapmap]
rs200505	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200506	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200512	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200514	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs202079	0.94[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs202082	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs202083	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs202098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs202099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs595449	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs609919	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs613291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628483	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs639234	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs653221	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs653251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672233	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846498	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315003	0.87[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs202101	KATNAL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
3	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:30886000-30898400	Weak transcription	Lung	lung
5	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:30888000-30903400	Weak transcription	Fetal Thymus	thymus
7	chr13:30888000-30909600	Weak transcription	Thymus	Thymus
8	chr13:30889400-30899400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:30889400-30906400	Weak transcription	Primary B cells from cord blood	blood
10	chr13:30889600-30898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:30889600-30902400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr13:30892800-30897800	Weak transcription	Right Atrium	heart
13	chr13:30892800-30913400	Weak transcription	Psoas Muscle	Psoas
14	chr13:30894200-30897400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr13:30894200-30897400	Weak transcription	NHLF	lung
16	chr13:30894200-30897800	Weak transcription	Fetal Muscle Leg	muscle
17	chr13:30894200-30900200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr13:30894200-30903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr13:30894600-30897600	Weak transcription	Brain Hippocampus Middle	brain
20	chr13:30894800-30905400	Weak transcription	Brain Anterior Caudate	brain
21	chr13:30895800-30898000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr13:30896000-30899600	Weak transcription	Fetal Heart	heart
23	chr13:30896800-30897400	ZNF genes & repeats	Aorta	Aorta
24	chr13:30896800-30898000	Enhancers	K562	blood
25	chr13:30896800-30898200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr13:30897200-30905600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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