Variant report

Variant	rs200786375
Chromosome Location	chr10:26861285-26861286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv550229	chr10:26848206-26889823	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv971873	chr10:26850516-26870913	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3332234	chr10:26853285-26881775	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv466837	chr10:26858860-26866420	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
6	nsv550230	chr10:26858860-26866420	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	esv3407233	chr10:26859446-26862044	Enhancers Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
8	esv3400546	chr10:26860715-26947192	Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv3436664	chr10:26860755-26969397	Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	esv3409599	chr10:26860997-26947298	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv894976	chr10:26861229-26925722	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26840200-26863200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:26845400-26863000	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:26846400-26861600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr10:26846800-26863000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:26848400-26863000	Strong transcription	Fetal Thymus	thymus
6	chr10:26856400-26864000	Weak transcription	Pancreas	Pancrea
7	chr10:26857600-26880200	Weak transcription	Adipose Nuclei	Adipose
8	chr10:26858400-26879400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:26859000-26862200	Weak transcription	GM12878-XiMat	blood
10	chr10:26860800-26862000	Weak transcription	Thymus	Thymus
11	chr10:26860800-26862000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:26860800-26862200	Weak transcription	Primary T cells from cord blood	blood
13	chr10:26860800-26862600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr10:26860800-26863000	Strong transcription	Primary hematopoietic stem cells	blood
15	chr10:26860800-26881200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr10:26860800-26892600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr10:26861000-26862000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:26861000-26862000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:26861000-26862600	Strong transcription	Primary B cells from cord blood	blood
20	chr10:26861000-26862600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:26861000-26862800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr10:26861000-26864200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:26861000-26864200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr10:26861000-26864200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:26861000-26874400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:26861000-26886600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:26861200-26862000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:26861200-26862000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr10:26861200-26862600	Weak transcription	Dnd41	blood
30	chr10:26861200-26872000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:26861200-26884400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:26861200-26884800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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