Variant report

Variant	rs2013365
Chromosome Location	chr6:33763688-33763689
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33762823..33764594-chr6:33767158..33770034,2	K562	blood:
2	chr6:33763660..33765625-chr6:33771390..33773993,2	MCF-7	breast:
3	chr6:33762825..33765119-chr6:33771052..33773006,2	K562	blood:
4	chr6:33763437..33765350-chr6:34117421..34119459,2	K562	blood:
5	chr6:33752857..33754428-chr6:33763521..33765942,2	MCF-7	breast:
6	chr6:33756053..33759472-chr6:33760488..33763867,4	MCF-7	breast:
7	chr6:33760837..33764079-chr6:33785814..33788727,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000096395	Chromatin interaction
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11752297	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1359781	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013381	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2296743	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2296746	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2296747	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2296748	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2395449	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3793079	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3806108	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3806109	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3806110	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4342423	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4711351	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4711355	0.90[AFR][1000 genomes]
rs4713681	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713682	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713683	0.91[EUR][1000 genomes]
rs4713684	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6457741	0.90[AFR][1000 genomes]
rs6904991	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6920075	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922275	0.90[AFR][1000 genomes]
rs6925273	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6929696	0.90[AFR][1000 genomes]
rs747695	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs751726	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs751728	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs755496	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs756137	0.91[EUR][1000 genomes]
rs9357164	0.90[AFR][1000 genomes]
rs9380378	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9394165	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9394166	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394167	0.90[AFR][1000 genomes]
rs9394168	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs943474	0.90[AFR][1000 genomes]
rs943475	0.90[AFR][1000 genomes]
rs943477	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs943478	0.90[AFR][1000 genomes]
rs943479	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv462898	chr6:33723383-33768897	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv602840	chr6:33723383-33768897	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33757600-33775800	Weak transcription	Right Atrium	heart
2	chr6:33759000-33765600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:33762000-33766800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:33762400-33763800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:33762400-33767800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:33762600-33764000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:33763000-33765000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:33763000-33766200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:33763200-33767000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:33763400-33765200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:33763400-33765200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:33763400-33767200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:33763600-33764600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:33763600-33764600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:33763600-33764600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:33763600-33765000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:33763600-33765200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:33763600-33765200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:33763600-33765200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:33763600-33765400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:33763600-33765600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:33763600-33765600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:33763600-33765800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:33763600-33771600	Weak transcription	Fetal Intestine Small	intestine

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