Variant report

Variant	rs3806110
Chromosome Location	chr6:33770629-33770630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11752297	0.82[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1359781	0.84[CEU][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2013365	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2013381	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2281816	0.93[ASW][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2296743	1.00[ASW][hapmap];0.83[CEU][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2296744	0.81[ASW][hapmap]
rs2296746	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2296747	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2296748	0.93[ASW][hapmap];0.84[CEU][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2395402	0.81[ASW][hapmap]
rs2395449	0.81[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3763257	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3763260	0.93[ASW][hapmap];0.81[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3793079	0.84[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3806108	1.00[ASW][hapmap];0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap];0.90[MEX][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3806109	1.00[ASW][hapmap];0.84[CEU][hapmap];0.88[CHB][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4342423	0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4711351	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713681	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4713682	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4713683	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4713684	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4713686	0.90[MEX][hapmap]
rs6904991	0.82[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6920075	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6925273	0.84[EUR][1000 genomes]
rs747695	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs751726	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs751728	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs755496	0.82[CHB][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs756137	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9366829	0.88[JPT][hapmap]
rs9380376	0.82[JPT][hapmap];0.81[MEX][hapmap]
rs9380378	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9380381	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9394165	0.83[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9394166	0.84[CEU][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394168	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs943477	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33757600-33775800	Weak transcription	Right Atrium	heart
2	chr6:33763600-33771600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:33766000-33776000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:33766800-33776400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:33768800-33772400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:33769000-33771400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:33769000-33772200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:33769200-33771600	Enhancers	Brain Germinal Matrix	brain
9	chr6:33769200-33773200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:33769400-33770800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:33769600-33770800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:33769600-33770800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:33769600-33771000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:33769800-33770800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:33770000-33771200	Enhancers	Fetal Muscle Leg	muscle
16	chr6:33770000-33773000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:33770200-33770800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:33770200-33771000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:33770200-33771000	Enhancers	NH-A	brain
20	chr6:33770400-33771000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:33770400-33771600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:33770400-33776000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:33770600-33770800	Bivalent Enhancer	Fetal Brain Male	brain
24	chr6:33770600-33771400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:33770600-33776200	Weak transcription	H1 Cell Line	embryonic stem cell

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