Variant report

Variant	rs2017422
Chromosome Location	chr3:67372897-67372898
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10510964	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12490292	0.88[ASN][1000 genomes]
rs12493000	0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1387866	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1490253	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1490254	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1490255	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1490256	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1552622	0.86[AMR][1000 genomes]
rs1552623	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1586669	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1586670	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17046182	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17805868	0.91[ASN][1000 genomes]
rs1844554	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1994610	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2130543	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2363664	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4115374	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4856846	0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4856847	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs57179316	0.88[ASN][1000 genomes]
rs61692736	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6548457	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6548458	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6548459	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6548460	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6548461	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6548462	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6548463	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6548466	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6548467	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6548469	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66509153	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs66649021	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs66731212	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs66955393	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6780117	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67857762	0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6793719	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6795852	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72914506	0.85[ASN][1000 genomes]
rs7612558	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs885110	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs885111	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs902323	0.85[ASN][1000 genomes]
rs931437	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs951519	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9876253	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67368000-67373000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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