Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10510964	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12490292	0.82[ASN][1000 genomes]
rs12493000	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1490254	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17046182	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17805868	0.93[ASN][1000 genomes]
rs1994610	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2017422	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4856846	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4856847	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57179316	0.82[ASN][1000 genomes]
rs61692736	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66509153	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66649021	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66731212	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66955393	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67857762	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72914506	0.90[ASN][1000 genomes]
rs885110	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs902323	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs931437	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7612558	FOXP1	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67346800-67355600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:67347200-67355800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:67347600-67362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:67350600-67355800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:67353400-67355400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:67353400-67355600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:67353400-67356000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:67353400-67356200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:67353600-67355000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:67353800-67355200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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