Variant report

Variant	rs201887
Chromosome Location	chr11:32603285-32603286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11031964	0.86[ASW][hapmap]
rs1486580	0.80[CHB][hapmap]
rs169323	0.90[CHB][hapmap]
rs201826	0.90[CHB][hapmap]
rs201828	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs201839	0.90[CHB][hapmap]
rs201842	0.89[CHB][hapmap]
rs442108	0.85[ASN][1000 genomes]
rs926735	0.86[ASW][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs201887	FSHB	cis	parietal	SCAN
rs201887	C11orf41	cis	parietal	SCAN
rs201887	QSER1	cis	parietal	SCAN
rs201887	ZNF526	trans	cerebellum	SCAN
rs201887	QSER1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32597400-32604200	Weak transcription	K562	blood
2	chr11:32602200-32603600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:32602400-32603400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:32602400-32603800	Enhancers	A549	lung
5	chr11:32602600-32603400	Enhancers	Dnd41	blood
6	chr11:32602800-32604800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:32603000-32604800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:32603000-32605000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:32603200-32603400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:32603200-32603400	Flanking Active TSS	HepG2	liver
11	chr11:32603200-32603400	Enhancers	HMEC	breast
12	chr11:32603200-32603600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:32603200-32603800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr11:32603200-32603800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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