Variant report

Variant	rs201839
Chromosome Location	chr11:32600937-32600938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32599748..32604204-chr11:32604276..32608693,5	MCF-7	breast:
2	chr11:32596798..32601721-chr11:32602583..32609272,14	K562	blood:
3	chr11:32599649..32602330-chr11:32903654..32905352,2	K562	blood:

Variant related genes	Relation type
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1038554	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs10734413	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10742286	0.85[EUR][1000 genomes]
rs10767954	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10767955	0.96[CEU][hapmap]
rs10767956	0.96[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs10767961	0.96[CEU][hapmap]
rs10835956	0.89[EUR][1000 genomes]
rs10835958	0.96[CEU][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs10835959	0.96[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs10835966	0.85[EUR][1000 genomes]
rs10835968	0.96[CEU][hapmap]
rs11031938	0.89[EUR][1000 genomes]
rs11031940	0.96[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs11031963	0.85[EUR][1000 genomes]
rs12293058	0.88[EUR][1000 genomes]
rs1324397	0.90[EUR][1000 genomes]
rs1486582	0.96[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs1509888	0.96[CEU][hapmap]
rs1543420	0.95[CEU][hapmap]
rs169323	0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169326	0.96[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs172100	0.96[CEU][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap]
rs172101	0.96[CEU][hapmap]
rs183235	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201827	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs201829	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201831	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs201832	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs201837	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201847	0.89[EUR][1000 genomes]
rs201848	0.89[EUR][1000 genomes]
rs201856	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs201857	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs201858	0.82[EUR][1000 genomes]
rs201860	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs201869	0.96[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap]
rs201872	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs201873	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs201875	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs201876	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs201877	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs201878	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs201879	0.96[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs201881	0.85[GIH][hapmap];0.83[MEX][hapmap]
rs201883	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs201886	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs201887	0.90[CHB][hapmap]
rs201901	0.96[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs201902	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs201903	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs201905	0.96[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2036795	0.89[EUR][1000 genomes]
rs2129307	0.88[EUR][1000 genomes]
rs2171242	0.88[EUR][1000 genomes]
rs2419403	0.88[EUR][1000 genomes]
rs2467583	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2474147	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2748353	0.96[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs400655	0.89[EUR][1000 genomes]
rs401257	0.90[EUR][1000 genomes]
rs4551733	0.87[EUR][1000 genomes]
rs4756150	0.96[CEU][hapmap]
rs4756183	0.96[CEU][hapmap]
rs506814	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs511667	0.92[CEU][hapmap];0.86[MEX][hapmap];0.91[EUR][1000 genomes]
rs527728	0.96[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs567062	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484587	1.00[CEU][hapmap]
rs6484597	0.96[CEU][hapmap]
rs7104435	0.87[EUR][1000 genomes]
rs7105305	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7118792	0.89[EUR][1000 genomes]
rs7129723	0.96[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs738508	0.96[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap]
rs7932758	0.88[EUR][1000 genomes]
rs7938914	0.85[EUR][1000 genomes]
rs7942796	0.88[EUR][1000 genomes]
rs7944621	0.82[CEU][hapmap]
rs7947996	0.89[EUR][1000 genomes]
rs910551	0.96[CEU][hapmap]
rs966028	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs9787914	0.92[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.88[EUR][1000 genomes]
rs9943472	0.96[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs201839	C11orf41	cis	parietal	SCAN
rs201839	QSER1	cis	cerebellum	SCAN
rs201839	EIF3M	cis	cerebellum	SCAN
rs201839	QSER1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32597400-32604200	Weak transcription	K562	blood

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