Variant report

Variant	rs201860
Chromosome Location	chr11:32616867-32616868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32612272..32614363-chr11:32615550..32617501,2	MCF-7	breast:
2	chr11:32603991..32608863-chr11:32615596..32618826,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149100	Chromatin interaction
ENSG00000270903	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1038554	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10734413	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10742286	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10767954	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10767956	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10835956	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10835958	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10835959	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10835966	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11031938	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11031940	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11031963	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12293058	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1324397	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1486582	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs169323	0.81[EUR][1000 genomes]
rs169326	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs183235	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs201826	0.81[EUR][1000 genomes]
rs201829	0.81[EUR][1000 genomes]
rs201837	0.81[EUR][1000 genomes]
rs201839	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs201842	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs201847	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201848	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201849	1.00[ASN][1000 genomes]
rs201856	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201857	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201858	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201872	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201873	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201875	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201876	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201877	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201878	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201879	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201881	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs201883	0.81[EUR][1000 genomes]
rs201886	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs201897	1.00[ASN][1000 genomes]
rs201899	0.84[ASN][1000 genomes]
rs201901	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201902	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201903	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs201905	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036795	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2129307	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2171242	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2419403	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2748353	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs400655	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs401257	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4551733	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs511667	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567062	0.81[EUR][1000 genomes]
rs7104426	0.81[AMR][1000 genomes]
rs7104435	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7105305	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7118792	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7129723	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7932758	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7933967	0.85[ASN][1000 genomes]
rs7938914	0.85[EUR][1000 genomes]
rs7942796	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7947996	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs966028	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9787914	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9943472	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32607000-32617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:32607800-32621200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:32607800-32628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:32608200-32619400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:32608400-32619000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:32608400-32619400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:32608400-32619400	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:32608400-32628200	Strong transcription	HSMM	muscle
9	chr11:32608600-32617000	Strong transcription	A549	lung
10	chr11:32608600-32618400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:32608600-32619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:32608600-32628400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:32608800-32628000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:32609000-32628200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:32609000-32629600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:32609200-32623400	Strong transcription	Hela-S3	cervix
17	chr11:32609200-32623800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:32609400-32618400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:32609400-32630200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:32609600-32618600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:32609600-32618600	Strong transcription	Fetal Stomach	stomach
22	chr11:32609800-32617800	Strong transcription	HepG2	liver
23	chr11:32609800-32617800	Strong transcription	K562	blood
24	chr11:32609800-32619800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:32609800-32626000	Strong transcription	NHDF-Ad	bronchial
26	chr11:32609800-32628000	Strong transcription	Fetal Thymus	thymus
27	chr11:32610000-32617200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:32610000-32617200	Strong transcription	NHEK	skin
29	chr11:32610000-32618600	Strong transcription	H9 Cell Line	embryonic stem cell
30	chr11:32610000-32618600	Strong transcription	Rectal Smooth Muscle	rectum
31	chr11:32610000-32618800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:32610000-32619200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:32610000-32619800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:32610000-32619800	Strong transcription	Left Ventricle	heart
35	chr11:32610000-32620200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:32610000-32621200	Strong transcription	Liver	Liver
37	chr11:32610000-32621200	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr11:32610000-32626000	Strong transcription	Placenta	Placenta
39	chr11:32610000-32626000	Strong transcription	Osteobl	bone
40	chr11:32610000-32627400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr11:32610000-32627800	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr11:32610000-32628200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:32610200-32617000	Strong transcription	Lung	lung
44	chr11:32610200-32617000	Strong transcription	Pancreas	Pancrea
45	chr11:32610200-32617800	Strong transcription	Brain Germinal Matrix	brain
46	chr11:32610200-32617800	Strong transcription	Brain Hippocampus Middle	brain
47	chr11:32610200-32618000	Strong transcription	Ovary	ovary
48	chr11:32610200-32618400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:32610200-32618400	Strong transcription	Fetal Muscle Leg	muscle
50	chr11:32610200-32618600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links