Variant report

Variant	rs201897
Chromosome Location	chr11:32627650-32627651
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32624676..32629824-chr11:32630493..32635209,8	K562	blood:
2	chr11:32620605..32624374-chr11:32625458..32629163,4	K562	blood:

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1038554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10734413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10742285	0.81[CEU][hapmap]
rs10742286	0.83[ASN][1000 genomes]
rs10767954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10767955	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10767956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10767961	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10767964	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10767965	0.89[CHB][hapmap]
rs10767966	0.82[CEU][hapmap]
rs10767967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10835956	0.89[ASN][1000 genomes]
rs10835958	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10835959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10835966	0.83[ASN][1000 genomes]
rs10835968	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10835971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10835972	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10835974	0.89[CHB][hapmap]
rs11031938	0.90[ASN][1000 genomes]
rs11031940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11031947	0.88[CHB][hapmap]
rs11031963	0.83[ASN][1000 genomes]
rs11031969	0.94[CHB][hapmap]
rs12224741	0.89[CHB][hapmap]
rs12293058	0.85[ASN][1000 genomes]
rs1324397	0.95[ASN][1000 genomes]
rs1324399	0.81[CEU][hapmap]
rs1352176	0.84[CHB][hapmap]
rs1396995	0.82[CEU][hapmap]
rs1396996	0.89[CHB][hapmap]
rs1486580	0.84[CHB][hapmap]
rs1486581	0.89[CHB][hapmap]
rs1486582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1509883	0.81[CEU][hapmap]
rs1509888	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1509891	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1543420	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs169323	0.82[CEU][hapmap]
rs169326	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs172100	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs172101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17328461	0.82[CEU][hapmap]
rs185689	0.81[CEU][hapmap]
rs198266	0.82[CEU][hapmap]
rs201826	0.95[CEU][hapmap]
rs201846	0.84[CHB][hapmap]
rs201847	0.90[ASN][1000 genomes]
rs201848	0.90[ASN][1000 genomes]
rs201849	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201851	0.89[CHB][hapmap]
rs201853	0.82[CEU][hapmap]
rs201854	0.83[CHB][hapmap]
rs201856	1.00[ASN][1000 genomes]
rs201857	1.00[ASN][1000 genomes]
rs201858	0.86[ASN][1000 genomes]
rs201860	1.00[ASN][1000 genomes]
rs201865	0.81[CEU][hapmap]
rs201868	0.82[CEU][hapmap]
rs201869	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201872	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs201873	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs201875	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs201876	1.00[ASN][1000 genomes]
rs201877	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs201878	1.00[ASN][1000 genomes]
rs201879	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs201880	0.89[CHB][hapmap]
rs201881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs201882	0.81[CEU][hapmap]
rs201884	0.81[CEU][hapmap]
rs201892	0.89[CHB][hapmap]
rs201893	0.82[CEU][hapmap]
rs201895	0.81[CEU][hapmap]
rs201899	0.84[ASN][1000 genomes]
rs201901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs201902	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs201903	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs201904	0.88[CHB][hapmap]
rs201905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs201906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2036795	0.90[ASN][1000 genomes]
rs2129307	0.85[ASN][1000 genomes]
rs2171242	0.85[ASN][1000 genomes]
rs2419403	0.85[ASN][1000 genomes]
rs2419766	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2419767	0.81[CEU][hapmap]
rs2748353	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs400655	0.96[ASN][1000 genomes]
rs401257	0.95[ASN][1000 genomes]
rs4551733	0.85[ASN][1000 genomes]
rs4756149	0.89[CHB][hapmap]
rs4756150	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4756179	0.89[CHB][hapmap]
rs4756183	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4756244	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4756245	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs511667	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs527728	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs552512	0.89[CHB][hapmap]
rs6484587	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6484597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7102857	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7104435	0.85[ASN][1000 genomes]
rs7105305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7109509	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7118792	0.90[ASN][1000 genomes]
rs7129723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs738508	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7932758	0.90[ASN][1000 genomes]
rs7933841	0.81[CEU][hapmap]
rs7933967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7936690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7938290	0.89[CHB][hapmap]
rs7942796	0.85[ASN][1000 genomes]
rs7944621	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs7947996	0.90[ASN][1000 genomes]
rs910551	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs926735	0.89[CHB][hapmap]
rs960389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs966028	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9787751	0.89[CHB][hapmap]
rs9787914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9943472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32607800-32628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:32608400-32628200	Strong transcription	HSMM	muscle
3	chr11:32608600-32628400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:32608800-32628000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:32609000-32628200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:32609000-32629600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:32609400-32630200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:32609800-32628000	Strong transcription	Fetal Thymus	thymus
9	chr11:32610000-32627800	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr11:32610000-32628200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:32610200-32628200	Strong transcription	Duodenum Mucosa	Duodenum
12	chr11:32610200-32628200	Strong transcription	NH-A	brain
13	chr11:32610600-32628000	Strong transcription	GM12878-XiMat	blood
14	chr11:32610600-32628200	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:32610800-32628200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:32612200-32628200	Strong transcription	HMEC	breast
17	chr11:32616800-32631000	Weak transcription	HSMMtube	muscle
18	chr11:32617000-32632000	Weak transcription	Gastric	stomach
19	chr11:32617400-32628800	Weak transcription	Fetal Brain Male	brain
20	chr11:32618400-32630000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:32618600-32628200	Strong transcription	A549	lung
22	chr11:32619200-32627800	Strong transcription	Primary B cells from cord blood	blood
23	chr11:32619800-32627800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:32619800-32627800	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:32619800-32628000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:32620000-32628000	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:32620000-32628400	Weak transcription	NHLF	lung
28	chr11:32620200-32628200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:32621000-32628200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:32621000-32631600	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:32621000-32631600	Weak transcription	Psoas Muscle	Psoas
32	chr11:32621400-32628000	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr11:32622000-32628000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:32622000-32628200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:32622000-32628200	Strong transcription	Liver	Liver
36	chr11:32622000-32628200	Strong transcription	K562	blood
37	chr11:32622000-32628400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:32622200-32627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:32622600-32629800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:32622800-32629200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:32622800-32629200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr11:32624600-32629600	Strong transcription	Brain Germinal Matrix	brain
43	chr11:32624800-32628000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:32624800-32628000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:32625000-32628000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:32625000-32628000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:32625000-32630000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:32625200-32628000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr11:32625200-32628200	Strong transcription	Hela-S3	cervix
50	chr11:32625200-32628600	Strong transcription	Monocytes-CD14+_RO01746	blood

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