Variant report

Variant	rs201846
Chromosome Location	chr11:32680328-32680329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1038554	0.84[CHB][hapmap]
rs10734413	0.83[CHB][hapmap]
rs10767954	0.84[CHB][hapmap]
rs10767955	0.84[CHB][hapmap]
rs10767956	0.89[CHB][hapmap]
rs10767961	0.84[CHB][hapmap]
rs10767964	0.89[CHB][hapmap]
rs10767965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs10767967	0.84[CHB][hapmap]
rs10835958	0.89[CHB][hapmap]
rs10835959	0.89[CHB][hapmap]
rs10835968	0.84[CHB][hapmap]
rs10835971	0.84[CHB][hapmap]
rs10835972	0.84[CHB][hapmap]
rs10835974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11031937	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031940	0.89[CHB][hapmap]
rs11031941	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11031942	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11031943	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11031947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11031969	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12224741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1352176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1396996	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1486581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1486582	0.89[CHB][hapmap]
rs1509888	0.84[CHB][hapmap]
rs1509891	0.84[CHB][hapmap]
rs169326	0.89[CHB][hapmap]
rs172100	0.88[CHB][hapmap]
rs172101	0.84[CHB][hapmap]
rs175694	0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs201854	0.95[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap]
rs201861	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201869	0.89[CHB][hapmap]
rs201872	0.84[CHB][hapmap]
rs201873	0.84[CHB][hapmap]
rs201875	0.84[CHB][hapmap]
rs201877	0.84[CHB][hapmap]
rs201879	0.89[CHB][hapmap]
rs201880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201881	0.89[CHB][hapmap]
rs201892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs201894	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs201897	0.84[CHB][hapmap]
rs201901	0.89[CHB][hapmap]
rs201903	0.84[CHB][hapmap]
rs201904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs201905	0.89[CHB][hapmap]
rs201906	0.84[CHB][hapmap]
rs2171243	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2419766	0.84[CHB][hapmap]
rs2748353	0.89[CHB][hapmap]
rs4756149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4756150	0.84[CHB][hapmap]
rs4756170	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756183	0.84[CHB][hapmap]
rs4756244	0.89[CHB][hapmap]
rs4756245	0.84[CHB][hapmap]
rs4980791	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4980792	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs511667	0.84[CHB][hapmap]
rs527728	0.89[CHB][hapmap]
rs552512	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs55747817	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56154102	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56332271	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6484587	0.84[CHB][hapmap]
rs6484597	0.84[CHB][hapmap]
rs7102857	0.89[CHB][hapmap]
rs7105305	0.84[CHB][hapmap]
rs7109509	0.84[CHB][hapmap]
rs7121759	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7129723	0.89[CHB][hapmap]
rs72895293	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs738508	0.88[CHB][hapmap]
rs7924496	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7933967	0.84[CHB][hapmap]
rs7936690	0.84[CHB][hapmap]
rs7938290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7945988	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs910551	0.84[CHB][hapmap]
rs926735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs960389	0.89[CHB][hapmap]
rs966028	0.84[CHB][hapmap]
rs9787751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9787914	0.89[CHB][hapmap]
rs9943472	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32679600-32681600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:32679600-32681600	Enhancers	HMEC	breast
3	chr11:32679600-32681600	Enhancers	NHEK	skin
4	chr11:32679800-32681000	Enhancers	NH-A	brain
5	chr11:32679800-32681600	Enhancers	NHDF-Ad	bronchial
6	chr11:32680000-32680800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:32680200-32680600	Active TSS	Muscle Satellite Cultured Cells	--
8	chr11:32680200-32680800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:32680200-32681000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:32680200-32681200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:32680200-32681400	Enhancers	A549	lung

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