Variant report

Variant	rs201904
Chromosome Location	chr11:32637182-32637183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32395907..32396480-chr11:32636734..32637269,2	MCF-7	breast:
2	chr11:32344822..32345650-chr11:32636673..32637622,3	MCF-7	breast:
3	chr11:32628200..32630785-chr11:32636529..32638264,2	K562	blood:
4	chr11:32407234..32408158-chr11:32636750..32637629,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1038554	0.88[CHB][hapmap]
rs10734413	0.87[CHB][hapmap]
rs10767954	0.88[CHB][hapmap]
rs10767955	0.88[CHB][hapmap]
rs10767956	0.88[CHB][hapmap]
rs10767961	0.88[CHB][hapmap]
rs10767964	0.94[CHB][hapmap]
rs10767965	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap]
rs10767967	0.88[CHB][hapmap]
rs10835958	0.88[CHB][hapmap]
rs10835959	0.88[CHB][hapmap]
rs10835968	0.88[CHB][hapmap]
rs10835971	0.88[CHB][hapmap]
rs10835972	0.88[CHB][hapmap]
rs10835974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs11031937	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11031940	0.88[CHB][hapmap]
rs11031941	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11031942	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11031943	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11031947	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11031964	0.84[GIH][hapmap]
rs11031969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12224741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1352176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1396996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1486580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1486581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1486582	0.88[CHB][hapmap]
rs1509888	0.88[CHB][hapmap]
rs1509891	0.88[CHB][hapmap]
rs1543420	0.85[CHB][hapmap]
rs169326	0.88[CHB][hapmap]
rs172100	0.87[CHB][hapmap]
rs172101	0.88[CHB][hapmap]
rs175694	0.83[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs201851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs201854	0.92[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap]
rs201861	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs201869	0.88[CHB][hapmap]
rs201872	0.88[CHB][hapmap]
rs201873	0.88[CHB][hapmap]
rs201875	0.88[CHB][hapmap]
rs201877	0.88[CHB][hapmap]
rs201879	0.88[CHB][hapmap]
rs201880	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs201881	0.88[CHB][hapmap]
rs201892	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap]
rs201894	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201897	0.88[CHB][hapmap]
rs201901	0.88[CHB][hapmap]
rs201903	0.88[CHB][hapmap]
rs201905	0.88[CHB][hapmap]
rs201906	0.88[CHB][hapmap]
rs2171243	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2419766	0.88[CHB][hapmap]
rs2748353	0.88[CHB][hapmap]
rs442108	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4756149	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs4756150	0.88[CHB][hapmap]
rs4756170	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4756179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4756183	0.88[CHB][hapmap]
rs4756244	0.88[CHB][hapmap]
rs4756245	0.88[CHB][hapmap]
rs4980791	0.87[EUR][1000 genomes]
rs4980792	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs511667	0.88[CHB][hapmap]
rs527728	0.88[CHB][hapmap]
rs552512	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55747817	0.88[EUR][1000 genomes]
rs56154102	0.87[EUR][1000 genomes]
rs56332271	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6484587	0.88[CHB][hapmap]
rs6484597	0.88[CHB][hapmap]
rs7102857	0.88[CHB][hapmap]
rs7105305	0.88[CHB][hapmap]
rs7109509	0.88[CHB][hapmap]
rs7121759	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7129723	0.88[CHB][hapmap]
rs72895293	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs738508	0.88[CHB][hapmap]
rs7924496	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7933967	0.88[CHB][hapmap]
rs7936690	0.88[CHB][hapmap]
rs7938290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7945988	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs910551	0.88[CHB][hapmap]
rs926735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap]
rs960389	0.88[CHB][hapmap]
rs966028	0.88[CHB][hapmap]
rs9787751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9787914	0.88[CHB][hapmap]
rs9943472	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424973	chr11:32633425-32664062	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32625400-32637200	Weak transcription	Fetal Heart	heart
2	chr11:32637000-32637400	Enhancers	Fetal Kidney	kidney

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