Variant report

Variant	rs1486581
Chromosome Location	chr11:32723951-32723952
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32723875..32726854-chr11:32913788..32916126,2	K562	blood:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1038554	0.89[CHB][hapmap]
rs10734413	0.88[CHB][hapmap]
rs10767954	0.89[CHB][hapmap]
rs10767955	0.88[CHB][hapmap]
rs10767956	0.89[CHB][hapmap]
rs10767961	0.89[CHB][hapmap]
rs10767964	0.94[CHB][hapmap]
rs10767965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap]
rs10767967	0.89[CHB][hapmap]
rs10835958	0.89[CHB][hapmap]
rs10835959	0.89[CHB][hapmap]
rs10835968	0.89[CHB][hapmap]
rs10835971	0.89[CHB][hapmap]
rs10835972	0.89[CHB][hapmap]
rs10835974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11031937	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11031940	0.89[CHB][hapmap]
rs11031941	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031943	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11031947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12224741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1352176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1396996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1486580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486582	0.89[CHB][hapmap]
rs1509888	0.89[CHB][hapmap]
rs1509891	0.89[CHB][hapmap]
rs1543420	0.85[CHB][hapmap]
rs169326	0.89[CHB][hapmap]
rs172100	0.88[CHB][hapmap]
rs172101	0.89[CHB][hapmap]
rs175694	0.85[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs201846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs201854	0.95[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];0.86[YRI][hapmap]
rs201861	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201869	0.89[CHB][hapmap]
rs201872	0.89[CHB][hapmap]
rs201873	0.89[CHB][hapmap]
rs201875	0.89[CHB][hapmap]
rs201877	0.89[CHB][hapmap]
rs201879	0.89[CHB][hapmap]
rs201880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201881	0.89[CHB][hapmap]
rs201892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[MKK][hapmap];0.95[YRI][hapmap]
rs201894	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs201897	0.89[CHB][hapmap]
rs201901	0.89[CHB][hapmap]
rs201903	0.89[CHB][hapmap]
rs201904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs201905	0.89[CHB][hapmap]
rs201906	0.88[CHB][hapmap]
rs2171243	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2419766	0.89[CHB][hapmap]
rs2748353	0.89[CHB][hapmap]
rs4756149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4756150	0.89[CHB][hapmap]
rs4756170	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756183	0.89[CHB][hapmap]
rs4756244	0.89[CHB][hapmap]
rs4756245	0.89[CHB][hapmap]
rs4980791	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4980792	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs511667	0.88[CHB][hapmap]
rs527728	0.89[CHB][hapmap]
rs552512	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs55747817	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56154102	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56332271	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6484587	0.89[CHB][hapmap]
rs6484597	0.89[CHB][hapmap]
rs7102857	0.89[CHB][hapmap]
rs7105305	0.89[CHB][hapmap]
rs7109509	0.89[CHB][hapmap]
rs7121759	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7129723	0.89[CHB][hapmap]
rs72895293	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs738508	0.88[CHB][hapmap]
rs7924496	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7933967	0.89[CHB][hapmap]
rs7936690	0.88[CHB][hapmap]
rs7938290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7945988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs910551	0.89[CHB][hapmap]
rs926735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs960389	0.89[CHB][hapmap]
rs966028	0.89[CHB][hapmap]
rs9787751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787914	0.89[CHB][hapmap]
rs9943472	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1043616	chr11:32702734-32734607	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32711000-32725600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:32722800-32724200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:32722800-32724600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:32723600-32724600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:32723800-32725600	Weak transcription	Dnd41	blood

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