Variant report

Variant	rs175694
Chromosome Location	chr11:32618488-32618489
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:32618439-32620448	K562	blood:	n/a	n/a
2	POLR2A	chr11:32618263-32618507	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:32614271..32616312-chr11:32618406..32621440,3	MCF-7	breast:
2	chr11:32453512..32456485-chr11:32618384..32621260,2	K562	blood:
3	chr11:32603991..32608863-chr11:32615596..32618826,4	MCF-7	breast:
4	chr11:32604808..32607064-chr11:32618117..32620137,2	MCF-7	breast:

Variant related genes	Relation type
HNRNPA3P9	TF binding region
ENSG00000149100	Chromatin interaction
ENSG00000270903	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10767965	0.85[CHB][hapmap];0.95[YRI][hapmap]
rs10835974	0.85[CHB][hapmap]
rs11031937	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11031941	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11031942	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11031943	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11031947	0.84[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11031969	0.84[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs12224741	0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1352176	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs1396996	0.85[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1486580	0.86[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1486581	0.85[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs201846	0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201851	0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs201854	0.95[YRI][hapmap]
rs201861	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs201880	0.85[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs201892	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs201894	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs201904	0.83[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2171243	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs442108	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4756149	0.85[CHB][hapmap]
rs4756170	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4756179	0.85[CHB][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4980791	0.86[EUR][1000 genomes]
rs4980792	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs552512	0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs55747817	0.86[EUR][1000 genomes]
rs56154102	0.86[EUR][1000 genomes]
rs56332271	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7121759	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72895293	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7924496	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7938290	0.85[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs7945988	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs926735	0.85[CHB][hapmap]
rs9787751	0.85[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32607800-32621200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:32607800-32628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:32608200-32619400	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:32608400-32619000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:32608400-32619400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:32608400-32619400	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:32608400-32628200	Strong transcription	HSMM	muscle
8	chr11:32608600-32619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:32608600-32628400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:32608800-32628000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:32609000-32628200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:32609000-32629600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:32609200-32623400	Strong transcription	Hela-S3	cervix
14	chr11:32609200-32623800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:32609400-32630200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:32609600-32618600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:32609600-32618600	Strong transcription	Fetal Stomach	stomach
18	chr11:32609800-32619800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:32609800-32626000	Strong transcription	NHDF-Ad	bronchial
20	chr11:32609800-32628000	Strong transcription	Fetal Thymus	thymus
21	chr11:32610000-32618600	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr11:32610000-32618600	Strong transcription	Rectal Smooth Muscle	rectum
23	chr11:32610000-32618800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:32610000-32619200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:32610000-32619800	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:32610000-32619800	Strong transcription	Left Ventricle	heart
27	chr11:32610000-32620200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:32610000-32621200	Strong transcription	Liver	Liver
29	chr11:32610000-32621200	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr11:32610000-32626000	Strong transcription	Placenta	Placenta
31	chr11:32610000-32626000	Strong transcription	Osteobl	bone
32	chr11:32610000-32627400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr11:32610000-32627800	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr11:32610000-32628200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:32610200-32618600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:32610200-32618800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:32610200-32619000	Strong transcription	Fetal Brain Female	brain
38	chr11:32610200-32619800	Strong transcription	Fetal Lung	lung
39	chr11:32610200-32619800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr11:32610200-32619800	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:32610200-32621200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:32610200-32621200	Strong transcription	Fetal Intestine Large	intestine
43	chr11:32610200-32624200	Strong transcription	HUVEC	blood vessel
44	chr11:32610200-32626200	Strong transcription	Primary B cells from peripheral blood	blood
45	chr11:32610200-32627400	Strong transcription	Adipose Nuclei	Adipose
46	chr11:32610200-32628200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr11:32610200-32628200	Strong transcription	NH-A	brain
48	chr11:32610400-32618600	Strong transcription	Thymus	Thymus
49	chr11:32610400-32619600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
50	chr11:32610400-32619600	Strong transcription	Stomach Smooth Muscle	stomach

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