Variant report

Variant	rs10835974
Chromosome Location	chr11:32816130-32816131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1038554	0.89[CHB][hapmap]
rs10488703	0.81[ASW][hapmap];0.86[YRI][hapmap]
rs10734413	0.88[CHB][hapmap]
rs10767954	0.89[CHB][hapmap]
rs10767955	0.88[CHB][hapmap]
rs10767956	0.89[CHB][hapmap]
rs10767961	0.89[CHB][hapmap]
rs10767964	0.94[CHB][hapmap]
rs10767965	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10767967	0.89[CHB][hapmap]
rs10835958	0.89[CHB][hapmap]
rs10835959	0.89[CHB][hapmap]
rs10835968	0.89[CHB][hapmap]
rs10835971	0.89[CHB][hapmap]
rs10835972	0.89[CHB][hapmap]
rs10835977	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11031940	0.89[CHB][hapmap]
rs11031947	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs11031964	0.84[GIH][hapmap]
rs11031969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032001	0.83[AMR][1000 genomes]
rs11032044	0.92[YRI][hapmap]
rs11529902	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12224741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1352176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1396996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1486580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1486581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1486582	0.89[CHB][hapmap]
rs1509888	0.89[CHB][hapmap]
rs1509891	0.89[CHB][hapmap]
rs1543420	0.85[CHB][hapmap]
rs169326	0.89[CHB][hapmap]
rs172100	0.88[CHB][hapmap]
rs172101	0.89[CHB][hapmap]
rs175694	0.85[CHB][hapmap]
rs201846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201854	0.95[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs201869	0.89[CHB][hapmap]
rs201892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs201897	0.89[CHB][hapmap]
rs201901	0.89[CHB][hapmap]
rs201903	0.89[CHB][hapmap]
rs201904	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs201905	0.89[CHB][hapmap]
rs201906	0.88[CHB][hapmap]
rs2419766	0.89[CHB][hapmap]
rs2748353	0.89[CHB][hapmap]
rs4756149	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs4756150	0.89[CHB][hapmap]
rs4756179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs4756183	0.89[CHB][hapmap]
rs4756244	0.89[CHB][hapmap]
rs4756245	0.89[CHB][hapmap]
rs511667	0.88[CHB][hapmap]
rs527728	0.89[CHB][hapmap]
rs6484587	0.89[CHB][hapmap]
rs6484597	0.89[CHB][hapmap]
rs7102857	0.89[CHB][hapmap]
rs7105305	0.89[CHB][hapmap]
rs7109509	0.89[CHB][hapmap]
rs7119573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129723	0.89[CHB][hapmap]
rs738508	0.88[CHB][hapmap]
rs7933967	0.89[CHB][hapmap]
rs7936690	0.88[CHB][hapmap]
rs7938290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs910551	0.89[CHB][hapmap]
rs926735	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs960389	0.89[CHB][hapmap]
rs966028	0.89[CHB][hapmap]
rs9787751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9787914	0.89[CHB][hapmap]
rs9943472	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
8	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
9	nsv897191	chr11:32805169-32903263	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32814800-32825600	Weak transcription	Liver	Liver
2	chr11:32816000-32816200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr11:32816000-32816200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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