Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10488703	0.89[CEU][hapmap];0.96[TSI][hapmap]
rs10488704	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]
rs10767965	0.84[GIH][hapmap]
rs10835974	0.84[GIH][hapmap]
rs10835981	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]
rs11031936	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11031947	0.84[GIH][hapmap]
rs11032001	0.82[AFR][1000 genomes]
rs11032044	0.88[CEU][hapmap]
rs17251699	1.00[LWK][hapmap]
rs201845	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs201854	0.84[GIH][hapmap]
rs201880	0.81[GIH][hapmap];0.82[MEX][hapmap]
rs201887	0.86[ASW][hapmap]
rs201892	0.84[GIH][hapmap]
rs201900	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs201904	0.84[GIH][hapmap]
rs2024636	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs4756149	0.84[GIH][hapmap];0.81[MEX][hapmap]
rs4756179	0.84[GIH][hapmap];0.82[MEX][hapmap]
rs56154102	0.80[AMR][1000 genomes]
rs56695506	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7108128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7483614	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs7938290	0.81[CEU][hapmap]
rs926735	1.00[ASW][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap]
rs9736849	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv983179	chr11:32745147-32782088	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11031964	C11orf41	cis	parietal	SCAN
rs11031964	ANXA2P1	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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