Variant report

Variant	rs201877
Chromosome Location	chr11:32610388-32610389
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:32610093-32610656	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:32610031-32610703	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr11:32610010-32610620	HepG2	liver:	n/a	n/a
4	POLR2A	chr11:32610078-32610758	GM12878	blood:	n/a	n/a
5	POLR2A	chr11:32610056-32610686	GM12878	blood:	n/a	n/a
6	POLR2A	chr11:32610155-32610840	GM12892	blood:	n/a	n/a
7	POLR2A	chr11:32609986-32610746	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:32455462..32457058-chr11:32608687..32611459,2	K562	blood:
2	chr11:32605232..32608580-chr11:32610157..32613118,3	MCF-7	breast:
3	chr11:32455134..32460391-chr11:32603988..32611641,10	K562	blood:
4	chr11:32605376..32607127-chr11:32609129..32611535,2	MCF-7	breast:

No data

Variant related genes	Relation type
EIF3M	TF binding region
ENSG00000184937	Chromatin interaction
ENSG00000183242	Chromatin interaction
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1038554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10734413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10742286	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10767954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10767955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10767956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10767961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10767964	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10767965	0.89[CHB][hapmap]
rs10835956	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10835958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10835959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10835966	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10835968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10835971	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11031938	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11031940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11031947	0.88[CHB][hapmap]
rs11031963	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11031969	0.94[CHB][hapmap]
rs12224741	0.89[CHB][hapmap]
rs12293058	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1324397	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1352176	0.84[CHB][hapmap]
rs1396996	0.89[CHB][hapmap]
rs1486580	0.84[CHB][hapmap]
rs1486581	0.89[CHB][hapmap]
rs1486582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1509888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1543420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs169323	0.82[EUR][1000 genomes]
rs169326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs172100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs172101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs183235	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs201826	0.82[EUR][1000 genomes]
rs201829	0.82[EUR][1000 genomes]
rs201831	0.80[EUR][1000 genomes]
rs201832	0.81[EUR][1000 genomes]
rs201837	0.82[EUR][1000 genomes]
rs201839	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs201842	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs201846	0.84[CHB][hapmap]
rs201847	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201848	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201849	1.00[ASN][1000 genomes]
rs201851	0.89[CHB][hapmap]
rs201854	0.83[CHB][hapmap]
rs201856	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201857	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201858	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201860	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201875	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201876	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201878	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201880	0.89[CHB][hapmap]
rs201881	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs201883	0.83[EUR][1000 genomes]
rs201886	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs201892	0.89[CHB][hapmap]
rs201897	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs201899	0.84[ASN][1000 genomes]
rs201901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201902	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs201904	0.88[CHB][hapmap]
rs201905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201906	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2036795	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2129307	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2171242	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2419403	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2474147	0.81[EUR][1000 genomes]
rs2748353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs400655	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs401257	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4551733	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4756149	0.89[CHB][hapmap]
rs4756150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4756179	0.89[CHB][hapmap]
rs4756183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4756244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4756245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs511667	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs552512	0.89[CHB][hapmap]
rs567062	0.82[EUR][1000 genomes]
rs6484587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6484597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7104426	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7104435	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7105305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7109509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7118792	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7129723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs738508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7932758	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7933967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7936690	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7938290	0.89[CHB][hapmap]
rs7938914	0.87[EUR][1000 genomes]
rs7942796	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7944621	0.86[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap]
rs7947996	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs910551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs926735	0.89[CHB][hapmap]
rs966028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9787751	0.89[CHB][hapmap]
rs9787914	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9943472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32606800-32610400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:32606800-32611000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:32606800-32611400	Weak transcription	Esophagus	oesophagus
4	chr11:32606800-32611400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:32606800-32611400	Weak transcription	Stomach Mucosa	stomach
6	chr11:32606800-32613400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:32606800-32613400	Weak transcription	Aorta	Aorta
8	chr11:32606800-32616000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:32607000-32610400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:32607000-32610400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:32607000-32611400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:32607000-32617000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:32607200-32610400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:32607200-32610800	Weak transcription	Brain Substantia Nigra	brain
15	chr11:32607200-32612000	Weak transcription	Brain Angular Gyrus	brain
16	chr11:32607400-32610400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:32607400-32610600	Weak transcription	Primary B cells from cord blood	blood
18	chr11:32607800-32613200	Weak transcription	Small Intestine	intestine
19	chr11:32607800-32621200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:32607800-32628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:32608200-32619400	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:32608400-32610400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr11:32608400-32610400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:32608400-32610400	Weak transcription	Fetal Brain Male	brain
25	chr11:32608400-32610400	Weak transcription	Right Ventricle	heart
26	chr11:32608400-32610400	Weak transcription	Spleen	Spleen
27	chr11:32608400-32610600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:32608400-32610800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
29	chr11:32608400-32610800	Weak transcription	Gastric	stomach
30	chr11:32608400-32611400	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:32608400-32612000	Weak transcription	Psoas Muscle	Psoas
32	chr11:32608400-32616200	Genic enhancers	Primary monocytes fromperipheralblood	blood
33	chr11:32608400-32619000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:32608400-32619400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:32608400-32619400	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:32608400-32628200	Strong transcription	HSMM	muscle
37	chr11:32608600-32610400	Weak transcription	Brain Anterior Caudate	brain
38	chr11:32608600-32610400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:32608600-32617000	Strong transcription	A549	lung
40	chr11:32608600-32618400	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:32608600-32619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:32608600-32628400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:32608800-32628000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:32609000-32610400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:32609000-32610600	Genic enhancers	Dnd41	blood
46	chr11:32609000-32628200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:32609000-32629600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:32609200-32623400	Strong transcription	Hela-S3	cervix
49	chr11:32609200-32623800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:32609400-32611000	Enhancers	Primary neutrophils fromperipheralblood	blood

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