Variant report

Variant	rs169323
Chromosome Location	chr11:32593954-32593955
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32592853..32594547-chr11:32604860..32606613,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10767956	0.87[TSI][hapmap]
rs10835958	0.87[TSI][hapmap]
rs10835959	0.87[TSI][hapmap]
rs11031940	0.87[TSI][hapmap]
rs1486582	0.87[TSI][hapmap]
rs169326	0.82[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs172100	0.89[TSI][hapmap]
rs183235	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201826	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201827	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201829	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201831	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs201832	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs201837	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201839	0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201840	0.82[CEU][hapmap]
rs201842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201856	0.81[EUR][1000 genomes]
rs201857	0.81[EUR][1000 genomes]
rs201860	0.81[EUR][1000 genomes]
rs201869	0.87[TSI][hapmap]
rs201872	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201873	0.82[EUR][1000 genomes]
rs201875	0.83[EUR][1000 genomes]
rs201876	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201877	0.82[EUR][1000 genomes]
rs201878	0.82[EUR][1000 genomes]
rs201879	0.82[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs201886	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs201887	0.90[CHB][hapmap]
rs201897	0.82[CEU][hapmap]
rs201901	0.82[MEX][hapmap];0.87[TSI][hapmap]
rs201905	0.82[MEX][hapmap];0.87[TSI][hapmap]
rs201906	0.82[CEU][hapmap]
rs2467583	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2474147	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2748353	0.87[TSI][hapmap]
rs506814	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs527728	0.82[MEX][hapmap];0.87[TSI][hapmap]
rs567062	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129723	0.87[TSI][hapmap]
rs738508	0.81[MEX][hapmap];0.87[TSI][hapmap]
rs7933967	0.82[CEU][hapmap]
rs7944621	0.81[CEU][hapmap]
rs9943472	0.87[TSI][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs169323	C11orf41	cis	parietal	SCAN
rs169323	QSER1	cis	parietal	SCAN
rs169323	QSER1	cis	cerebellum	SCAN
rs169323	C11orf41	cis	lymphoblastoid	seeQTL
rs169323	NAT10	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32592200-32595000	Enhancers	Dnd41	blood
2	chr11:32592600-32594200	Enhancers	Fetal Thymus	thymus
3	chr11:32592800-32594800	Weak transcription	K562	blood
4	chr11:32593400-32595000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links