Variant report

Variant	rs201840
Chromosome Location	chr11:32601144-32601145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32599748..32604204-chr11:32604276..32608693,5	MCF-7	breast:
2	chr11:32596798..32601721-chr11:32602583..32609272,14	K562	blood:
3	chr11:32599649..32602330-chr11:32903654..32905352,2	K562	blood:

Variant related genes	Relation type
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10742285	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs10767966	0.82[ASN][1000 genomes]
rs11031908	0.95[ASN][1000 genomes]
rs12284205	1.00[ASN][1000 genomes]
rs1324399	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1386179	0.90[ASN][1000 genomes]
rs1386180	0.90[ASN][1000 genomes]
rs1386181	0.90[ASN][1000 genomes]
rs1396995	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1509883	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs169323	0.82[CEU][hapmap]
rs169325	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17328461	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs185689	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs198266	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs201838	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs201841	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs201853	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201865	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs201868	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201882	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[ASN][1000 genomes]
rs201884	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs201885	1.00[ASN][1000 genomes]
rs201888	1.00[ASN][1000 genomes]
rs201893	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs201895	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs201896	1.00[ASN][1000 genomes]
rs201898	0.82[ASN][1000 genomes]
rs2419767	0.82[ASN][1000 genomes]
rs2450409	1.00[ASN][1000 genomes]
rs2467586	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs271022	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs511851	1.00[ASN][1000 genomes]
rs7929459	0.90[ASN][1000 genomes]
rs7933841	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32597400-32604200	Weak transcription	K562	blood

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