Variant report

Variant	rs201885
Chromosome Location	chr11:32603849-32603850
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32599748..32604204-chr11:32604276..32608693,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10767966	0.82[ASN][1000 genomes]
rs11031908	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12284205	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324399	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1386179	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1386180	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1386181	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1396995	0.82[EUR][1000 genomes]
rs169325	1.00[ASN][1000 genomes]
rs198266	0.82[ASN][1000 genomes]
rs201838	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201840	1.00[ASN][1000 genomes]
rs201841	0.97[ASN][1000 genomes]
rs201882	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201893	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs201895	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201896	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201898	0.82[ASN][1000 genomes]
rs2419767	0.82[ASN][1000 genomes]
rs2450409	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467586	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511851	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929459	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7933841	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32597400-32604200	Weak transcription	K562	blood
2	chr11:32602800-32604800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:32603000-32604800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:32603000-32605000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:32603400-32604200	Weak transcription	Dnd41	blood
6	chr11:32603400-32604800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:32603400-32604800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:32603400-32604800	Weak transcription	HMEC	breast
9	chr11:32603600-32604600	Weak transcription	HepG2	liver
10	chr11:32603600-32604800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:32603600-32605200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:32603800-32604800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:32603800-32604800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:32603800-32604800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:32603800-32604800	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links