Variant report

Variant	rs10767966
Chromosome Location	chr11:32814473-32814474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32734959..32735691-chr11:32814406..32814938,2	MCF-7	breast:
2	chr11:32734492..32735804-chr11:32813911..32815565,5	MCF-7	breast:
3	chr11:32395477..32395997-chr11:32813804..32814649,2	K562	blood:
4	chr11:32789537..32792072-chr11:32812363..32815095,2	K562	blood:
5	chr11:32770910..32771799-chr11:32813954..32815012,4	MCF-7	breast:
6	chr11:32734751..32735852-chr11:32814047..32815123,4	K562	blood:
7	chr11:32344866..32345612-chr11:32814115..32815021,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10742285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10835971	0.82[CEU][hapmap]
rs11602296	0.82[EUR][1000 genomes]
rs12284205	0.82[ASN][1000 genomes]
rs1324399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1386179	0.82[ASN][1000 genomes]
rs1386180	0.82[ASN][1000 genomes]
rs1386181	0.82[ASN][1000 genomes]
rs1396995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1509883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs169325	0.82[ASN][1000 genomes]
rs17328461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs185689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs198266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201838	0.82[ASN][1000 genomes]
rs201840	0.82[ASN][1000 genomes]
rs201853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201884	0.82[ASN][1000 genomes]
rs201885	0.82[ASN][1000 genomes]
rs201888	0.82[ASN][1000 genomes]
rs201893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs201896	0.82[ASN][1000 genomes]
rs201897	0.82[CEU][hapmap]
rs201906	0.82[CEU][hapmap]
rs2419767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2450409	0.82[ASN][1000 genomes]
rs2467586	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs271022	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs511851	0.82[ASN][1000 genomes]
rs7929459	0.82[ASN][1000 genomes]
rs7933841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7933967	0.86[CEU][hapmap]
rs7936690	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
8	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
9	nsv897191	chr11:32805169-32903263	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32814000-32815000	Active TSS	A549	lung
2	chr11:32814200-32814600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:32814200-32814600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:32814200-32814600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:32814200-32814600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr11:32814200-32814600	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr11:32814200-32814600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr11:32814200-32814600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
9	chr11:32814200-32814600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr11:32814200-32814600	Flanking Active TSS	Liver	Liver
11	chr11:32814200-32814600	Flanking Active TSS	Brain Substantia Nigra	brain
12	chr11:32814200-32814600	Flanking Active TSS	GM12878-XiMat	blood
13	chr11:32814200-32814800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:32814200-32814800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:32814200-32814800	Active TSS	Brain Anterior Caudate	brain
16	chr11:32814200-32814800	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr11:32814200-32814800	Active TSS	Right Atrium	heart
18	chr11:32814200-32815000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:32814200-32815000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:32814200-32815000	Active TSS	Brain Hippocampus Middle	brain
21	chr11:32814200-32815000	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr11:32814200-32815000	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr11:32814200-32815000	Flanking Active TSS	Dnd41	blood
24	chr11:32814200-32815000	Enhancers	NHEK	skin
25	chr11:32814400-32814600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr11:32814400-32814600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:32814400-32814600	Enhancers	Primary B cells from cord blood	blood
28	chr11:32814400-32814600	Active TSS	Primary hematopoietic stem cells	blood
29	chr11:32814400-32814600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr11:32814400-32814600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr11:32814400-32814600	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:32814400-32814600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:32814400-32814600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:32814400-32814600	Active TSS	Fetal Kidney	kidney
35	chr11:32814400-32814600	Bivalent Enhancer	Fetal Lung	lung
36	chr11:32814400-32814600	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr11:32814400-32814600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
38	chr11:32814400-32814600	Enhancers	K562	blood
39	chr11:32814400-32814600	Active TSS	NH-A	brain
40	chr11:32814400-32814800	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:32814400-32814800	Enhancers	Primary B cells from peripheral blood	blood
42	chr11:32814400-32814800	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr11:32814400-32814800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:32814400-32814800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:32814400-32814800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:32814400-32814800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:32814400-32814800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:32814400-32814800	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr11:32814400-32814800	Active TSS	Brain Angular Gyrus	brain
50	chr11:32814400-32814800	Active TSS	Fetal Brain Female	brain

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