Variant report

Variant	rs201896
Chromosome Location	chr11:32626392-32626393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32624676..32629824-chr11:32630493..32635209,8	K562	blood:
2	chr11:32620605..32624374-chr11:32625458..32629163,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10767966	0.82[ASN][1000 genomes]
rs11031908	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12284205	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324399	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1386179	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1386180	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1386181	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1396995	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs169325	1.00[ASN][1000 genomes]
rs198266	0.82[ASN][1000 genomes]
rs201838	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201840	1.00[ASN][1000 genomes]
rs201841	0.97[ASN][1000 genomes]
rs201882	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201884	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201885	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201888	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201893	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs201895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201898	0.82[ASN][1000 genomes]
rs2419767	0.82[ASN][1000 genomes]
rs2450409	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467586	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511851	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929459	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7933841	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32607800-32628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:32608400-32628200	Strong transcription	HSMM	muscle
3	chr11:32608600-32628400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:32608800-32628000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:32609000-32628200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:32609000-32629600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:32609400-32630200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:32609800-32628000	Strong transcription	Fetal Thymus	thymus
9	chr11:32610000-32627400	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr11:32610000-32627800	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr11:32610000-32628200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:32610200-32627400	Strong transcription	Adipose Nuclei	Adipose
13	chr11:32610200-32628200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr11:32610200-32628200	Strong transcription	NH-A	brain
15	chr11:32610400-32627400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr11:32610600-32628000	Strong transcription	GM12878-XiMat	blood
17	chr11:32610600-32628200	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:32610800-32628200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:32612200-32628200	Strong transcription	HMEC	breast
20	chr11:32614800-32627200	Weak transcription	Esophagus	oesophagus
21	chr11:32616200-32627000	Weak transcription	Right Ventricle	heart
22	chr11:32616800-32631000	Weak transcription	HSMMtube	muscle
23	chr11:32617000-32632000	Weak transcription	Gastric	stomach
24	chr11:32617400-32628800	Weak transcription	Fetal Brain Male	brain
25	chr11:32618000-32626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:32618400-32627400	Weak transcription	Small Intestine	intestine
27	chr11:32618400-32630000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:32618600-32627400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:32618600-32628200	Strong transcription	A549	lung
30	chr11:32619200-32627800	Strong transcription	Primary B cells from cord blood	blood
31	chr11:32619800-32627200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:32619800-32627400	Weak transcription	Pancreas	Pancrea
33	chr11:32619800-32627600	Strong transcription	Dnd41	blood
34	chr11:32619800-32627800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:32619800-32627800	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:32619800-32628000	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:32620000-32628000	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:32620000-32628400	Weak transcription	NHLF	lung
39	chr11:32620200-32627400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:32620200-32628200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:32621000-32628200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:32621000-32631600	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:32621000-32631600	Weak transcription	Psoas Muscle	Psoas
44	chr11:32621400-32628000	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr11:32621800-32626600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:32621800-32627400	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr11:32622000-32627400	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr11:32622000-32627600	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr11:32622000-32628000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:32622000-32628200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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