Variant report

Variant	rs201882
Chromosome Location	chr11:32606232-32606233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr11:32604280-32607288	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr11:32604849-32606463	GM12892	blood:	n/a	n/a
3	CHD1	chr11:32606118-32606863	H1-hESC	embryonic stem cell:	n/a	chr11:32606636-32606646
4	POLR2A	chr11:32606140-32606286	HUVEC	blood vessel:	n/a	n/a
5	FOXM1	chr11:32604988-32606273	GM12878	blood:	n/a	n/a
6	POLR2A	chr11:32604854-32606743	GM12878	blood:	n/a	n/a
7	ELF1	chr11:32604974-32606331	GM12878	blood:	n/a	chr11:32605334-32605343 chr11:32606275-32606286 chr11:32606276-32606285 chr11:32605414-32605426 chr11:32605333-32605344 chr11:32606273-32606286 chr11:32606275-32606286 chr11:32605331-32605344
8	ELF1	chr11:32606122-32606503	K562	blood:	n/a	chr11:32606275-32606286 chr11:32606276-32606285 chr11:32606273-32606286 chr11:32606275-32606286
9	POLR2A	chr11:32604634-32606367	K562	blood:	n/a	n/a
10	TBP	chr11:32606161-32606463	GM12878	blood:	n/a	n/a
11	MAX	chr11:32604951-32606364	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr11:32606169-32606345	MCF-7	breast:	n/a	n/a
13	POLR2A	chr11:32604960-32606650	MCF10A-Er-Src	breast:	n/a	n/a
14	POLR2A	chr11:32606161-32606326	GM12878	blood:	n/a	n/a
15	POLR2A	chr11:32604964-32606469	GM19193	blood:	n/a	n/a
16	HEY1	chr11:32606176-32606784	K562	blood:	n/a	n/a
17	POLR2A	chr11:32606062-32606301	ProgFib	skin:	n/a	n/a
18	ZNF384	chr11:32606029-32606374	GM12878	blood:	n/a	n/a
19	TEAD4	chr11:32606033-32606954	K562	blood:	n/a	n/a
20	ELF1	chr11:32606146-32606378	HepG2	liver:	n/a	chr11:32606275-32606286 chr11:32606276-32606285 chr11:32606273-32606286 chr11:32606275-32606286
21	MXI1	chr11:32604788-32607255	IMR90	lung:	n/a	n/a
22	POLR2A	chr11:32604698-32607117	K562	blood:	n/a	n/a
23	POLR2A	chr11:32606078-32606479	GM12892	blood:	n/a	n/a
24	POLR2A	chr11:32604687-32606401	PFSK-1	brain:	n/a	n/a
25	SIN3A	chr11:32604953-32606854	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr11:32604852-32606821	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr11:32606057-32606339	HepG2	liver:	n/a	n/a
28	POLR2A	chr11:32604834-32607199	GM12891	blood:	n/a	n/a
29	POLR2A	chr11:32604901-32606436	GM12892	blood:	n/a	n/a
30	POLR2A	chr11:32604950-32606520	GM18505	blood:	n/a	n/a
31	ELF1	chr11:32606073-32606495	K562	blood:	n/a	chr11:32606275-32606286 chr11:32606276-32606285 chr11:32606273-32606286 chr11:32606275-32606286
32	POLR2A	chr11:32604884-32606420	GM12891	blood:	n/a	n/a
33	TCF7L2	chr11:32605005-32606232	Hela-S3	cervix:	n/a	n/a
34	RPC155	chr11:32605671-32606342	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr11:32605045-32606687	IMR90	lung:	n/a	n/a
36	MXI1	chr11:32604758-32607458	SK-N-SH	brain:	n/a	n/a
37	POLR2A	chr11:32604944-32606446	Hela-S3	cervix:	n/a	n/a
38	HA-E2F1	chr11:32604919-32606291	MCF-7	breast:	n/a	chr11:32605272-32605286
39	POLR2A	chr11:32605990-32606536	GM12892	blood:	n/a	n/a
40	POLR2A	chr11:32604694-32606989	PFSK-1	brain:	n/a	n/a
41	POLR2A	chr11:32604799-32607191	GM12878	blood:	n/a	n/a
42	POLR2A	chr11:32606184-32607283	HepG2	liver:	n/a	n/a
43	POLR2A	chr11:32604960-32607236	MCF10A-Er-Src	breast:	n/a	n/a
44	POLR2A	chr11:32606022-32606449	GM12892	blood:	n/a	n/a
45	ELF1	chr11:32606146-32606764	MCF-7	breast:	n/a	chr11:32606275-32606286 chr11:32606276-32606285 chr11:32606273-32606286 chr11:32606535-32606546 chr11:32606535-32606546 chr11:32606275-32606286
46	SIN3AK20	chr11:32605950-32606349	K562	blood:	n/a	n/a
47	ZNF384	chr11:32606017-32607065	K562	blood:	n/a	n/a
48	WRNIP1	chr11:32604933-32606906	GM12878	blood:	n/a	n/a
49	MXI1	chr11:32606110-32606451	GM12878	blood:	n/a	n/a
50	POLR2A	chr11:32604952-32607189	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:32605232..32608580-chr11:32610157..32613118,3	MCF-7	breast:
2	chr11:32605665..32608550-chr11:32673934..32676744,2	K562	blood:
3	chr11:32455134..32460391-chr11:32603988..32611641,10	K562	blood:
4	chr11:32455134..32458517-chr11:32603988..32607695,5	K562	blood:
5	chr11:32605376..32607127-chr11:32609129..32611535,2	MCF-7	breast:

Variant related genes	Relation type
EIF3M	TF binding region
ENSG00000184937	Chromatin interaction
ENSG00000149100	Chromatin interaction
ENSG00000183242	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10742285	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs10835971	0.81[CEU][hapmap]
rs11031908	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12284205	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1324399	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1386179	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1386180	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1386181	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1396995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[EUR][1000 genomes]
rs1509883	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs169325	0.95[ASN][1000 genomes]
rs17328461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs185689	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs198266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201838	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201840	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[ASN][1000 genomes]
rs201841	0.92[ASN][1000 genomes]
rs201853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs201865	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs201868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs201884	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201885	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201888	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs201895	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201896	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201897	0.81[CEU][hapmap]
rs201906	0.81[CEU][hapmap]
rs2450409	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2467586	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs271022	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap]
rs511851	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7929459	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7933841	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7933967	0.85[CEU][hapmap]
rs7936690	0.81[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs201882	QSER1	cis	cerebellum	SCAN
rs201882	NAT10	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32604600-32606400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:32604600-32606600	Active TSS	Colonic Mucosa	Colon
3	chr11:32604800-32606400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr11:32604800-32606400	Active TSS	Brain Anterior Caudate	brain
5	chr11:32604800-32606400	Active TSS	Colon Smooth Muscle	Colon
6	chr11:32604800-32606400	Active TSS	Duodenum Mucosa	Duodenum
7	chr11:32604800-32606400	Active TSS	Fetal Heart	heart
8	chr11:32604800-32606400	Active TSS	Rectal Mucosa Donor 31	rectum
9	chr11:32604800-32606400	Active TSS	Rectal Smooth Muscle	rectum
10	chr11:32604800-32606600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:32604800-32606600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:32604800-32606600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:32604800-32606600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:32604800-32606600	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr11:32604800-32606600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:32604800-32606600	Active TSS	Brain Cingulate Gyrus	brain
17	chr11:32604800-32606600	Active TSS	Brain Substantia Nigra	brain
18	chr11:32604800-32606600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr11:32604800-32606600	Active TSS	Fetal Intestine Large	intestine
20	chr11:32604800-32606600	Active TSS	Placenta	Placenta
21	chr11:32604800-32606600	Active TSS	Stomach Smooth Muscle	stomach
22	chr11:32604800-32606600	Active TSS	NH-A	brain
23	chr11:32604800-32606800	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr11:32604800-32606800	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr11:32604800-32606800	Active TSS	Muscle Satellite Cultured Cells	--
26	chr11:32604800-32606800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:32604800-32606800	Active TSS	Fetal Muscle Trunk	muscle
28	chr11:32604800-32606800	Active TSS	HSMM	muscle
29	chr11:32604800-32607000	Active TSS	H9 Cell Line	embryonic stem cell
30	chr11:32604800-32607000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:32604800-32607000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:32604800-32607000	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr11:32604800-32607000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:32604800-32607000	Flanking Active TSS	Primary hematopoietic stem cells	blood
35	chr11:32604800-32607000	Active TSS	HSMMtube	muscle
36	chr11:32604800-32607000	Active TSS	NHDF-Ad	bronchial
37	chr11:32604800-32607200	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr11:32604800-32607200	Active TSS	H1 Cell Line	embryonic stem cell
39	chr11:32604800-32607200	Active TSS	Fetal Muscle Leg	muscle
40	chr11:32604800-32607200	Active TSS	Thymus	Thymus
41	chr11:32604800-32607400	Active TSS	NHLF	lung
42	chr11:32604800-32607600	Active TSS	Right Ventricle	heart
43	chr11:32605000-32606400	Active TSS	Sigmoid Colon	Sigmoid Colon
44	chr11:32605000-32606400	Active TSS	Small Intestine	intestine
45	chr11:32605000-32606600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:32605000-32606600	Active TSS	Esophagus	oesophagus
47	chr11:32605000-32606600	Active TSS	Gastric	stomach
48	chr11:32605000-32606600	Active TSS	Left Ventricle	heart
49	chr11:32605000-32606600	Active TSS	Lung	lung
50	chr11:32605000-32606600	Active TSS	Pancreas	Pancrea

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