Variant report

Variant	rs201856
Chromosome Location	chr11:32620590-32620591
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32614271..32616312-chr11:32618406..32621440,3	MCF-7	breast:
2	chr11:32453512..32456485-chr11:32618384..32621260,2	K562	blood:

Variant related genes	Relation type
ENSG00000270903	Chromatin interaction
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1038554	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10734413	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10742286	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10767954	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10767956	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10835956	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10835958	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10835959	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10835966	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11031938	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11031940	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11031963	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12293058	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1324397	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1486582	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs169323	0.81[EUR][1000 genomes]
rs169326	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs183235	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs201826	0.81[EUR][1000 genomes]
rs201829	0.81[EUR][1000 genomes]
rs201832	0.80[EUR][1000 genomes]
rs201837	0.81[EUR][1000 genomes]
rs201839	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs201842	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs201847	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201848	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs201849	1.00[ASN][1000 genomes]
rs201857	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201858	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201860	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201872	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201873	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201875	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201876	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201877	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201878	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201879	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201881	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs201883	0.82[EUR][1000 genomes]
rs201886	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs201897	1.00[ASN][1000 genomes]
rs201899	0.84[ASN][1000 genomes]
rs201901	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201902	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201903	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs201905	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036795	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2129307	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2171242	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2419403	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2474147	0.80[EUR][1000 genomes]
rs2748353	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs400655	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs401257	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4551733	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs511667	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567062	0.81[EUR][1000 genomes]
rs7104426	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7104435	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7105305	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7118792	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7129723	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7932758	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7933967	0.85[ASN][1000 genomes]
rs7938914	0.88[EUR][1000 genomes]
rs7942796	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7947996	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs966028	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9787914	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9943472	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32607800-32621200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:32607800-32628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:32608400-32628200	Strong transcription	HSMM	muscle
4	chr11:32608600-32628400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:32608800-32628000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:32609000-32628200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:32609000-32629600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:32609200-32623400	Strong transcription	Hela-S3	cervix
9	chr11:32609200-32623800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:32609400-32630200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:32609800-32626000	Strong transcription	NHDF-Ad	bronchial
12	chr11:32609800-32628000	Strong transcription	Fetal Thymus	thymus
13	chr11:32610000-32621200	Strong transcription	Liver	Liver
14	chr11:32610000-32621200	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr11:32610000-32626000	Strong transcription	Placenta	Placenta
16	chr11:32610000-32626000	Strong transcription	Osteobl	bone
17	chr11:32610000-32627400	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr11:32610000-32627800	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr11:32610000-32628200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:32610200-32621200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:32610200-32621200	Strong transcription	Fetal Intestine Large	intestine
22	chr11:32610200-32624200	Strong transcription	HUVEC	blood vessel
23	chr11:32610200-32626200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr11:32610200-32627400	Strong transcription	Adipose Nuclei	Adipose
25	chr11:32610200-32628200	Strong transcription	Duodenum Mucosa	Duodenum
26	chr11:32610200-32628200	Strong transcription	NH-A	brain
27	chr11:32610400-32627400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:32610600-32621000	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr11:32610600-32628000	Strong transcription	GM12878-XiMat	blood
30	chr11:32610600-32628200	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:32610800-32628200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:32611000-32621000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:32611200-32621200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:32611400-32626200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:32612200-32624000	Weak transcription	Stomach Mucosa	stomach
36	chr11:32612200-32628200	Strong transcription	HMEC	breast
37	chr11:32613400-32624000	Weak transcription	Fetal Heart	heart
38	chr11:32614200-32625400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:32614800-32627200	Weak transcription	Esophagus	oesophagus
40	chr11:32615200-32622200	Weak transcription	Colonic Mucosa	Colon
41	chr11:32616200-32622400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:32616200-32623800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:32616200-32624200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr11:32616200-32625400	Weak transcription	Aorta	Aorta
45	chr11:32616200-32625400	Weak transcription	Brain Angular Gyrus	brain
46	chr11:32616200-32627000	Weak transcription	Right Ventricle	heart
47	chr11:32616400-32623800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:32616800-32631000	Weak transcription	HSMMtube	muscle
49	chr11:32617000-32625400	Weak transcription	Lung	lung
50	chr11:32617000-32632000	Weak transcription	Gastric	stomach

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