Variant report

Variant	rs401257
Chromosome Location	chr11:32629696-32629697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32627731..32629834-chr11:32633041..32634679,2	K562	blood:
2	chr11:32624676..32629824-chr11:32630493..32635209,8	K562	blood:
3	chr11:32628200..32630785-chr11:32636529..32638264,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1038554	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10734413	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10742286	0.82[EUR][1000 genomes]
rs10767954	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10767956	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10835956	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10835958	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10835959	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10835966	0.82[EUR][1000 genomes]
rs11031938	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11031940	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11031963	0.82[EUR][1000 genomes]
rs12293058	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1324397	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1486582	0.85[EUR][1000 genomes]
rs169326	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs183235	0.88[EUR][1000 genomes]
rs201839	0.90[EUR][1000 genomes]
rs201842	0.90[EUR][1000 genomes]
rs201847	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs201848	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs201849	0.95[ASN][1000 genomes]
rs201856	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201857	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201858	0.81[ASN][1000 genomes]
rs201860	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201872	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201873	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201875	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201876	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201877	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201878	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201879	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201881	0.94[ASN][1000 genomes]
rs201886	0.90[EUR][1000 genomes]
rs201897	0.95[ASN][1000 genomes]
rs201901	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201902	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201903	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs201905	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2036795	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2129307	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2171242	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2419403	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2748353	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs400655	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4551733	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs511667	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7104435	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7105305	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7118792	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7129723	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7932758	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7933967	0.81[ASN][1000 genomes]
rs7938914	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7942796	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7947996	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs966028	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9787914	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9943472	0.82[EUR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32609400-32630200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:32616800-32631000	Weak transcription	HSMMtube	muscle
3	chr11:32617000-32632000	Weak transcription	Gastric	stomach
4	chr11:32618400-32630000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:32621000-32631600	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:32621000-32631600	Weak transcription	Psoas Muscle	Psoas
7	chr11:32622600-32629800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:32625000-32630000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:32625400-32637200	Weak transcription	Fetal Heart	heart
10	chr11:32625800-32634800	Weak transcription	HepG2	liver
11	chr11:32626000-32629800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:32626000-32629800	Weak transcription	Fetal Stomach	stomach
13	chr11:32626000-32629800	Weak transcription	Left Ventricle	heart
14	chr11:32626000-32630000	Weak transcription	Thymus	Thymus
15	chr11:32626000-32631600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:32626200-32629800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:32626200-32630000	Weak transcription	Fetal Brain Female	brain
18	chr11:32626200-32630800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:32626200-32631800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:32626600-32632400	Weak transcription	Fetal Kidney	kidney
21	chr11:32627200-32631600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:32627200-32635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:32627400-32629800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:32627400-32629800	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:32627400-32630800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:32627400-32630800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr11:32627400-32631000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:32627400-32631200	Weak transcription	Primary T cells from cord blood	blood
29	chr11:32627600-32630800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:32627800-32631600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr11:32628000-32629800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:32628000-32630200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:32628000-32630600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:32628200-32629800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:32628200-32629800	Weak transcription	Brain Anterior Caudate	brain
36	chr11:32628200-32629800	Weak transcription	Hela-S3	cervix
37	chr11:32628200-32629800	Weak transcription	HMEC	breast
38	chr11:32628200-32629800	Weak transcription	NH-A	brain
39	chr11:32628200-32630000	Weak transcription	HSMM	muscle
40	chr11:32628200-32631000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:32628200-32631000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:32628200-32631600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr11:32628200-32632600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:32628200-32635000	Weak transcription	Liver	Liver
45	chr11:32628200-32635400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:32628400-32629800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:32629000-32630000	ZNF genes & repeats	Dnd41	blood
48	chr11:32629000-32630200	ZNF genes & repeats	GM12878-XiMat	blood
49	chr11:32629000-32630600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
50	chr11:32629200-32630200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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