Variant report

Variant	rs201849
Chromosome Location	chr11:32653403-32653404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32472073..32474042-chr11:32651003..32653929,2	K562	blood:
2	chr11:31826183..31828674-chr11:32652044..32654221,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007372	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1038554	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10734413	0.85[ASN][1000 genomes]
rs10742286	0.83[ASN][1000 genomes]
rs10767954	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10767956	0.85[ASN][1000 genomes]
rs10835956	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10835958	0.88[ASN][1000 genomes]
rs10835959	0.88[ASN][1000 genomes]
rs10835966	0.83[ASN][1000 genomes]
rs11031938	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11031940	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11031963	0.83[ASN][1000 genomes]
rs12293058	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1324397	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1486582	0.83[ASN][1000 genomes]
rs169326	1.00[ASN][1000 genomes]
rs201847	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs201848	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs201856	1.00[ASN][1000 genomes]
rs201857	1.00[ASN][1000 genomes]
rs201858	0.86[ASN][1000 genomes]
rs201860	1.00[ASN][1000 genomes]
rs201872	1.00[ASN][1000 genomes]
rs201873	1.00[ASN][1000 genomes]
rs201875	1.00[ASN][1000 genomes]
rs201876	1.00[ASN][1000 genomes]
rs201877	1.00[ASN][1000 genomes]
rs201878	1.00[ASN][1000 genomes]
rs201879	1.00[ASN][1000 genomes]
rs201881	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs201897	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201899	0.84[ASN][1000 genomes]
rs201901	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs201902	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs201903	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs201905	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2036795	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2129307	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2171242	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2419403	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2748353	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs400655	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs401257	0.95[ASN][1000 genomes]
rs4551733	0.85[ASN][1000 genomes]
rs511667	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7104435	0.85[ASN][1000 genomes]
rs7105305	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7118792	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7129723	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7932758	0.90[ASN][1000 genomes]
rs7933967	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7942796	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7947996	0.90[ASN][1000 genomes]
rs966028	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9787914	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9943472	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424973	chr11:32633425-32664062	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32653200-32654000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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