Variant report

Variant	rs201858
Chromosome Location	chr11:32618163-32618164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32603991..32608863-chr11:32615596..32618826,4	MCF-7	breast:
2	chr11:32604808..32607064-chr11:32618117..32620137,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1038554	0.82[ASN][1000 genomes]
rs10835956	0.81[ASN][1000 genomes]
rs11031938	0.82[ASN][1000 genomes]
rs11031940	0.82[ASN][1000 genomes]
rs1324397	0.82[ASN][1000 genomes]
rs169326	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs183235	0.81[EUR][1000 genomes]
rs201839	0.82[EUR][1000 genomes]
rs201842	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201847	0.82[ASN][1000 genomes]
rs201848	0.82[ASN][1000 genomes]
rs201849	0.86[ASN][1000 genomes]
rs201856	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201857	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201860	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201872	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201873	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201875	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201876	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201877	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201878	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201879	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201881	0.85[ASN][1000 genomes]
rs201886	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs201897	0.86[ASN][1000 genomes]
rs201901	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201902	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201903	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs201905	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2036795	0.82[ASN][1000 genomes]
rs2748353	0.82[ASN][1000 genomes]
rs400655	0.83[ASN][1000 genomes]
rs401257	0.81[ASN][1000 genomes]
rs511667	0.86[ASN][1000 genomes]
rs7105305	0.82[ASN][1000 genomes]
rs7118792	0.82[ASN][1000 genomes]
rs7129723	0.82[ASN][1000 genomes]
rs7932758	0.82[ASN][1000 genomes]
rs7947996	0.82[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32607800-32621200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:32607800-32628400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:32608200-32619400	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:32608400-32619000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:32608400-32619400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:32608400-32619400	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:32608400-32628200	Strong transcription	HSMM	muscle
8	chr11:32608600-32618400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:32608600-32619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:32608600-32628400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:32608800-32628000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:32609000-32628200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:32609000-32629600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:32609200-32623400	Strong transcription	Hela-S3	cervix
15	chr11:32609200-32623800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:32609400-32618400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:32609400-32630200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:32609600-32618600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:32609600-32618600	Strong transcription	Fetal Stomach	stomach
20	chr11:32609800-32619800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:32609800-32626000	Strong transcription	NHDF-Ad	bronchial
22	chr11:32609800-32628000	Strong transcription	Fetal Thymus	thymus
23	chr11:32610000-32618600	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr11:32610000-32618600	Strong transcription	Rectal Smooth Muscle	rectum
25	chr11:32610000-32618800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:32610000-32619200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:32610000-32619800	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr11:32610000-32619800	Strong transcription	Left Ventricle	heart
29	chr11:32610000-32620200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:32610000-32621200	Strong transcription	Liver	Liver
31	chr11:32610000-32621200	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr11:32610000-32626000	Strong transcription	Placenta	Placenta
33	chr11:32610000-32626000	Strong transcription	Osteobl	bone
34	chr11:32610000-32627400	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr11:32610000-32627800	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr11:32610000-32628200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:32610200-32618400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:32610200-32618400	Strong transcription	Fetal Muscle Leg	muscle
39	chr11:32610200-32618600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:32610200-32618800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:32610200-32619000	Strong transcription	Fetal Brain Female	brain
42	chr11:32610200-32619800	Strong transcription	Fetal Lung	lung
43	chr11:32610200-32619800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr11:32610200-32619800	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:32610200-32621200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr11:32610200-32621200	Strong transcription	Fetal Intestine Large	intestine
47	chr11:32610200-32624200	Strong transcription	HUVEC	blood vessel
48	chr11:32610200-32626200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr11:32610200-32627400	Strong transcription	Adipose Nuclei	Adipose
50	chr11:32610200-32628200	Strong transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links