Variant report

Variant	rs2021078
Chromosome Location	chr6:29412968-29412969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1233487	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1345228	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2074466	0.99[ASN][1000 genomes]
rs2074469	0.96[ASN][1000 genomes]
rs2285791	0.86[ASN][1000 genomes]
rs2285792	0.86[ASN][1000 genomes]
rs4713226	0.89[ASN][1000 genomes]
rs4959120	0.81[ASN][1000 genomes]
rs734960	0.88[ASN][1000 genomes]
rs734961	0.88[ASN][1000 genomes]
rs7454176	0.86[ASN][1000 genomes]
rs9257863	0.95[ASN][1000 genomes]
rs9257869	0.85[ASN][1000 genomes]
rs9257873	0.88[ASN][1000 genomes]
rs9257874	0.88[ASN][1000 genomes]
rs9257879	0.84[ASN][1000 genomes]
rs9257886	0.84[ASN][1000 genomes]
rs9257889	0.86[ASN][1000 genomes]
rs9257890	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2021078	ZFP57	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29412600-29414400	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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