Variant report

Variant	rs9257869
Chromosome Location	chr6:29456172-29456173
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:29456129-29456190	HUVEC	blood vessel:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29456162-29456212	GM19239	blood:	n/a
2	chr6:29456162-29456212	HNPCEpiC	eye:	n/a
3	chr6:29456162-29456212	GM06990	blood:	n/a
4	chr6:29456162-29456212	NHBE	bronchial:	n/a
5	chr6:29456162-29456212	PFSK-1	brain:	n/a
6	chr6:29456162-29456212	NB4	blood:	n/a
7	chr6:29456162-29456212	PANC-1	pancreas:	n/a
8	chr6:29456162-29456212	NH-A	brain:	n/a
9	chr6:29456162-29456212	IMR90	lung:	fetal
10	chr6:29456162-29456212	HRPEpiC	eye:	n/a
11	chr6:29456162-29456212	LNCaP	prostate:	n/a
12	chr6:29456162-29456212	SAEC	small airway:	n/a
13	chr6:29456162-29456212	HL-60	blood:	n/a
14	chr6:29456162-29456212	HCT-116	colon:	n/a
15	chr6:29456162-29456212	SK-N-MC	brain:	n/a
16	chr6:29456162-29456212	CMK	blood:	n/a
17	chr6:29456162-29456212	HCM	heart:	n/a
18	chr6:29456162-29456212	H1-hESC	embryonic stem cell:	embryo
19	chr6:29456162-29456212	SK-N-SH_RA	brain:	n/a
20	chr6:29456162-29456212	RPTEC	kidney:	n/a
21	chr6:29456162-29456212	ECC-1	luminal epithelium:	n/a
22	chr6:29456162-29456212	HCPEpiC	choroid plexus:	n/a
23	chr6:29456162-29456212	A549	lung:	n/a
24	chr6:29456162-29456212	GM12891	blood:	n/a
25	chr6:29456162-29456212	AG04450	lung:	fetal
26	chr6:29456162-29456212	U87	brain:	n/a
27	chr6:29456162-29456212	ProgFib	skin:	n/a
28	chr6:29456162-29456212	HMEC	breast:	n/a
29	chr6:29456162-29456212	BJ	skin:	n/a
30	chr6:29456162-29456212	HEK293	kidney:	embryo
31	chr6:29456162-29456212	AG09309	skin:	n/a
32	chr6:29456162-29456212	AoSMC	blood vessel:	n/a
33	chr6:29456162-29456212	AG04449	skin:	fetal
34	chr6:29456162-29456212	AG10803	skin:	n/a
35	chr6:29456162-29456212	ovcar-3	ovarian:	n/a
36	chr6:29456162-29456212	AG09319	gingival:	n/a
37	chr6:29456162-29456212	Hela-S3	cervix:	n/a
38	chr6:29456162-29456212	Jurkat	blood:	n/a
39	chr6:29456162-29456212	SK-N-SH	brain:	n/a
40	chr6:29456162-29456212	Hepatocyte	liver:	n/a
41	chr6:29456162-29456212	Caco-2	colon:	n/a
42	chr6:29456162-29456212	HepG2	liver:	n/a
43	chr6:29456162-29456212	MCF10A-Er-Src	breast:	n/a
44	chr6:29456162-29456212	GM12892	blood:	n/a
45	chr6:29456162-29456212	HUVEC	blood vessel:	n/a
46	chr6:29456162-29456212	PrEC	prostate:	n/a
47	chr6:29456162-29456212	NHDF-neo	bronchial:	n/a
48	chr6:29456162-29456212	MCF-7	breast:	n/a
49	chr6:29456162-29456212	GM12878	blood:	n/a
50	chr6:29456162-29456212	HRCEpiC	kidney:	n/a

No data

Variant related genes	Relation type
MAS1L	TF binding region
MAS1L	CpG island

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1233487	0.96[ASN][1000 genomes]
rs1345228	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2021078	0.85[ASN][1000 genomes]
rs2074466	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2074469	0.83[ASN][1000 genomes]
rs2285791	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2285792	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713226	0.85[ASN][1000 genomes]
rs4959120	0.89[ASN][1000 genomes]
rs734960	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs734961	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7454176	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9257826	0.87[EUR][1000 genomes]
rs9257857	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9257863	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9257873	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257874	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257879	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9257886	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9257887	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9257888	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9257889	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9257890	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29452200-29457000	Weak transcription	Liver	Liver
2	chr6:29454800-29457800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:29455000-29457200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:29455400-29457200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:29455600-29457200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:29456000-29457800	Weak transcription	K562	blood

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