Variant report
| Variant | rs1345228 |
|---|---|
| Chromosome Location | chr6:29432390-29432391 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:29430057..29432693-chr6:29447492..29449143,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-OR11A1-1 | chr6:29432373-29432732 | NONHSAT108521 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1233487 | 0.93[ASN][1000 genomes] |
| rs2021078 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2074466 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2074469 | 0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2285791 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2285792 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4713226 | 0.93[ASN][1000 genomes] |
| rs4959120 | 0.86[ASN][1000 genomes] |
| rs734960 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs734961 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7454176 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9257826 | 0.82[EUR][1000 genomes] |
| rs9257857 | 0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9257863 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9257869 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9257873 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9257874 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9257879 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9257886 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9257889 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9257890 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830624 | chr6:29274525-29445565 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1345228 | OR2B2 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:29430000-29436600 | Weak transcription | Pancreas | Pancrea |
