Variant report

Variant	rs9257826
Chromosome Location	chr6:29362756-29362757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1345228	0.82[EUR][1000 genomes]
rs2074466	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2285791	0.83[EUR][1000 genomes]
rs2285792	0.85[EUR][1000 genomes]
rs734960	0.85[EUR][1000 genomes]
rs734961	0.85[EUR][1000 genomes]
rs7454176	0.81[EUR][1000 genomes]
rs9257857	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9257863	0.86[EUR][1000 genomes]
rs9257869	0.87[EUR][1000 genomes]
rs9257873	0.81[EUR][1000 genomes]
rs9257874	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9257879	0.82[EUR][1000 genomes]
rs9257886	0.83[EUR][1000 genomes]
rs9257887	0.86[EUR][1000 genomes]
rs9257888	0.86[EUR][1000 genomes]
rs9257889	0.85[EUR][1000 genomes]
rs9257890	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018937	chr6:28956136-29366175	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv966676	chr6:29326915-29365789	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv601225	chr6:29355148-29370285	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv601226	chr6:29356046-29370285	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv601227	chr6:29356331-29370285	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29362000-29363000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:29362400-29363000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:29362600-29363000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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