Variant report

Variant	rs9257857
Chromosome Location	chr6:29394926-29394927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1345228	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2074466	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2074469	0.81[EUR][1000 genomes]
rs2285791	0.83[EUR][1000 genomes]
rs2285792	0.85[EUR][1000 genomes]
rs734960	0.85[EUR][1000 genomes]
rs734961	0.85[EUR][1000 genomes]
rs7454176	0.83[EUR][1000 genomes]
rs9257826	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9257863	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9257869	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9257873	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9257874	0.87[EUR][1000 genomes]
rs9257879	0.82[EUR][1000 genomes]
rs9257886	0.83[EUR][1000 genomes]
rs9257889	0.85[EUR][1000 genomes]
rs9257890	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830624	chr6:29274525-29445565	Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9257857	HIST1H1A	cis	parietal	SCAN
rs9257857	OR2B2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29392600-29399800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:29394600-29395000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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