Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29470497..29473606-chr6:29476660..29479341,3	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1233487	0.90[ASN][1000 genomes]
rs1345228	0.86[ASN][1000 genomes]
rs2021078	0.81[ASN][1000 genomes]
rs2074466	0.82[ASN][1000 genomes]
rs2285791	0.93[ASN][1000 genomes]
rs2285792	0.93[ASN][1000 genomes]
rs4713226	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs734960	0.91[ASN][1000 genomes]
rs734961	0.91[ASN][1000 genomes]
rs7454176	0.91[ASN][1000 genomes]
rs9257863	0.84[ASN][1000 genomes]
rs9257869	0.89[ASN][1000 genomes]
rs9257873	0.91[ASN][1000 genomes]
rs9257874	0.91[ASN][1000 genomes]
rs9257877	0.96[EUR][1000 genomes]
rs9257879	0.91[ASN][1000 genomes]
rs9257886	0.91[ASN][1000 genomes]
rs9257889	0.93[ASN][1000 genomes]
rs9257890	0.93[ASN][1000 genomes]
rs9257901	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9257902	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv883529	chr6:29464365-29494897	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29468600-29496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:29475200-29477800	Enhancers	GM12878-XiMat	blood
3	chr6:29476800-29481600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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