Variant report

Variant	rs2024356
Chromosome Location	chr7:19577630-19577631
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10226646	1.00[AMR][1000 genomes]
rs10263648	1.00[AMR][1000 genomes]
rs2024352	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2215857	1.00[AMR][1000 genomes]
rs2215860	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2390121	1.00[AMR][1000 genomes]
rs4262238	1.00[AMR][1000 genomes]
rs4721788	1.00[AMR][1000 genomes]
rs4721789	1.00[AMR][1000 genomes]
rs55744531	0.82[AFR][1000 genomes]
rs56083210	0.91[AMR][1000 genomes]
rs6461444	1.00[AMR][1000 genomes]
rs6959906	1.00[AMR][1000 genomes]
rs73681807	0.91[AMR][1000 genomes]
rs73681810	0.91[AMR][1000 genomes]
rs73686038	0.91[AMR][1000 genomes]
rs9647978	1.00[AMR][1000 genomes]
rs9647979	1.00[AMR][1000 genomes]
rs976116	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	esv2752996	chr7:19392086-19684019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2759517	chr7:19396146-19620962	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2758107	chr7:19436043-19620962	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2752153	chr7:19509002-19620651	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv887824	chr7:19524863-19687779	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv887825	chr7:19536977-19615992	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1026185	chr7:19564488-19612246	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1016344	chr7:19574677-19654624	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1032609	chr7:19575555-19654624	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19576800-19578400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:19577200-19577800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:19577200-19578000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:19577200-19578000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:19577200-19578000	Enhancers	Colon Smooth Muscle	Colon
6	chr7:19577200-19578000	Active TSS	Osteobl	bone
7	chr7:19577400-19577800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:19577400-19577800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:19577400-19577800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:19577400-19577800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:19577400-19577800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr7:19577400-19577800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:19577400-19577800	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr7:19577400-19577800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr7:19577400-19578000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:19577400-19578000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr7:19577400-19578000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:19577400-19578000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:19577400-19578000	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:19577400-19578000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr7:19577400-19578000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:19577400-19578000	Enhancers	Brain Germinal Matrix	brain
23	chr7:19577400-19578000	Active TSS	Stomach Smooth Muscle	stomach
24	chr7:19577400-19578000	Enhancers	HMEC	breast
25	chr7:19577400-19578000	Enhancers	HSMMtube	muscle
26	chr7:19577400-19578200	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr7:19577400-19578200	Active TSS	Brain Cingulate Gyrus	brain
28	chr7:19577400-19578200	Active TSS	Brain Hippocampus Middle	brain
29	chr7:19577400-19578200	Active TSS	Brain Substantia Nigra	brain
30	chr7:19577400-19578200	Active TSS	NHDF-Ad	bronchial
31	chr7:19577400-19578400	Enhancers	HSMM	muscle
32	chr7:19577600-19577800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
33	chr7:19577600-19577800	Enhancers	Rectal Smooth Muscle	rectum
34	chr7:19577600-19578000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:19577600-19578000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr7:19577600-19578000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:19577600-19578000	Active TSS	Brain Angular Gyrus	brain
38	chr7:19577600-19578000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:19577600-19578400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links