Variant report

Variant	rs2215857
Chromosome Location	chr7:19594295-19594296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10226646	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10263648	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2024352	1.00[AMR][1000 genomes]
rs2024356	1.00[AMR][1000 genomes]
rs2192478	1.00[AFR][1000 genomes]
rs2215860	1.00[AMR][1000 genomes]
rs2390121	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4262238	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4721788	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4721789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55658738	0.84[AFR][1000 genomes]
rs55733941	0.84[AFR][1000 genomes]
rs55871349	0.84[AFR][1000 genomes]
rs56083210	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs56355539	0.84[AFR][1000 genomes]
rs59529630	0.84[AFR][1000 genomes]
rs6461444	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959906	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73681807	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73681810	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73686038	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9647978	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9647979	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs976116	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	esv2752996	chr7:19392086-19684019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2759517	chr7:19396146-19620962	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2758107	chr7:19436043-19620962	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2752153	chr7:19509002-19620651	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv887824	chr7:19524863-19687779	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv887825	chr7:19536977-19615992	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1026185	chr7:19564488-19612246	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1016344	chr7:19574677-19654624	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1032609	chr7:19575555-19654624	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1021494	chr7:19589814-19610128	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19580200-19597400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:19593800-19595000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:19594200-19595000	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links