Variant report

Variant	rs2027146
Chromosome Location	chr13:80404036-80404037
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12429730	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12875666	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1335281	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2027147	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2027148	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2152226	0.87[ASN][1000 genomes]
rs34928706	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4628842	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4885669	0.89[ASN][1000 genomes]
rs4885670	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4885676	0.88[EUR][1000 genomes]
rs4885677	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6563137	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs713614	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs713615	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7319612	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7333650	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7333880	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7338949	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74099556	0.84[AMR][1000 genomes]
rs7982512	0.82[AMR][1000 genomes]
rs7983143	0.87[AMR][1000 genomes]
rs7990168	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7990447	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9530975	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9530976	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9530978	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9530979	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9530983	0.81[AMR][1000 genomes]
rs9545235	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9545236	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9545242	0.82[AMR][1000 genomes]
rs9545246	0.82[AMR][1000 genomes]
rs9646080	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs970738	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1043768	chr13:80398379-80447095	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80403600-80408400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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