Variant report

Variant	rs2152226
Chromosome Location	chr13:80387466-80387467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10507900	0.87[EUR][1000 genomes]
rs11619959	0.86[EUR][1000 genomes]
rs12019641	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12428029	0.83[EUR][1000 genomes]
rs12429730	0.82[ASN][1000 genomes]
rs12867107	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12875666	0.84[ASN][1000 genomes]
rs1335288	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2027146	0.87[ASN][1000 genomes]
rs2027147	0.89[ASN][1000 genomes]
rs2027148	0.85[ASN][1000 genomes]
rs2039554	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2039555	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2039556	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2248413	0.85[EUR][1000 genomes]
rs2248563	0.82[EUR][1000 genomes]
rs2329137	0.82[EUR][1000 genomes]
rs2329138	0.82[EUR][1000 genomes]
rs2783085	0.86[EUR][1000 genomes]
rs2802634	0.81[EUR][1000 genomes]
rs2802640	0.86[EUR][1000 genomes]
rs2802641	0.85[EUR][1000 genomes]
rs35661635	0.86[EUR][1000 genomes]
rs4885658	0.87[EUR][1000 genomes]
rs4885660	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4885669	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4885670	0.97[ASN][1000 genomes]
rs6563137	0.89[ASN][1000 genomes]
rs713614	0.81[ASN][1000 genomes]
rs713615	0.81[ASN][1000 genomes]
rs7322877	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7327527	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7984156	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7990168	0.84[ASN][1000 genomes]
rs7990447	0.81[ASN][1000 genomes]
rs9530958	0.84[EUR][1000 genomes]
rs9530959	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9530976	0.86[ASN][1000 genomes]
rs9545191	0.81[EUR][1000 genomes]
rs9545203	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9545205	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9646080	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80384000-80387800	Enhancers	HUVEC	blood vessel
2	chr13:80385400-80388000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr13:80385800-80387800	Enhancers	Primary B cells from peripheral blood	blood
4	chr13:80386000-80387800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr13:80386000-80388200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr13:80386600-80387800	Weak transcription	Fetal Heart	heart
7	chr13:80386800-80387600	Enhancers	Primary B cells from cord blood	blood
8	chr13:80387400-80387800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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