Variant report

Variant	rs9646080
Chromosome Location	chr13:80411610-80411611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12429730	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12875666	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1335281	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2027146	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2027147	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2027148	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2152226	0.82[ASN][1000 genomes]
rs34928706	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4628842	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4885669	0.84[ASN][1000 genomes]
rs4885670	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4885676	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4885677	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6563137	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs713614	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs713615	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7319612	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7333650	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7333880	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7338949	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74099556	0.83[AMR][1000 genomes]
rs7982512	0.84[AMR][1000 genomes]
rs7983143	0.89[AMR][1000 genomes]
rs7984156	1.00[JPT][hapmap]
rs7990168	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7990447	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9530975	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9530976	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9530978	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9530979	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9530983	0.83[AMR][1000 genomes]
rs9545235	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9545236	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9545242	0.84[AMR][1000 genomes]
rs9545246	0.84[AMR][1000 genomes]
rs970738	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1043768	chr13:80398379-80447095	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80405800-80411800	Weak transcription	NHLF	lung
2	chr13:80410200-80412000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:80411200-80412400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:80411200-80413000	Enhancers	Hela-S3	cervix
5	chr13:80411400-80412600	Enhancers	NH-A	brain
6	chr13:80411600-80412000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:80411600-80412000	Enhancers	HMEC	breast
8	chr13:80411600-80412200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:80411600-80412600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:80411600-80412600	Enhancers	HSMM	muscle
11	chr13:80411600-80412600	Enhancers	HSMMtube	muscle
12	chr13:80411600-80412600	Enhancers	NHDF-Ad	bronchial
13	chr13:80411600-80413000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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