Variant report

Variant	rs4885670
Chromosome Location	chr13:80387914-80387915
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12019641	0.82[ASN][1000 genomes]
rs12429730	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12867107	0.85[ASN][1000 genomes]
rs12875666	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1335281	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2027146	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2027147	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2027148	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2039554	0.86[ASN][1000 genomes]
rs2039555	0.85[ASN][1000 genomes]
rs2039556	0.86[ASN][1000 genomes]
rs2152226	0.97[ASN][1000 genomes]
rs34928706	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4885660	0.81[ASN][1000 genomes]
rs4885669	0.99[ASN][1000 genomes]
rs4885676	0.83[EUR][1000 genomes]
rs6563137	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs713614	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs713615	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7319612	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7322877	0.86[ASN][1000 genomes]
rs7333650	0.82[EUR][1000 genomes]
rs7333880	0.83[EUR][1000 genomes]
rs7984156	0.82[ASN][1000 genomes]
rs7990168	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7990447	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9530975	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9530976	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9530978	0.81[AMR][1000 genomes]
rs9530979	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9545203	0.85[ASN][1000 genomes]
rs9545205	0.85[ASN][1000 genomes]
rs9545235	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9545236	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9646080	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs970738	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80385400-80388000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:80386000-80388200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr13:80387800-80388000	Enhancers	Monocytes-CD14+_RO01746	blood

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