Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1002783	0.83[AMR][1000 genomes]
rs13203503	0.83[AMR][1000 genomes]
rs13205675	0.81[EUR][1000 genomes]
rs1361094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556778	0.83[AMR][1000 genomes]
rs2105123	0.83[AMR][1000 genomes]
rs35213691	0.98[ASN][1000 genomes]
rs4706932	0.80[EUR][1000 genomes]
rs4706934	0.95[ASN][1000 genomes]
rs6454253	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6454254	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6916279	0.95[ASN][1000 genomes]
rs7753505	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7754927	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9294244	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9341911	0.95[ASN][1000 genomes]
rs9443955	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9443961	0.95[ASN][1000 genomes]
rs9449409	0.83[AMR][1000 genomes]
rs9449420	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9449427	0.92[ASN][1000 genomes]
rs945854	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830715	chr6:82806657-82956327	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82822600-82827400	Weak transcription	Left Ventricle	heart
2	chr6:82824200-82827800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:82825000-82828400	Enhancers	Fetal Heart	heart
4	chr6:82825400-82827600	Weak transcription	HepG2	liver
5	chr6:82826000-82826200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: