Variant report

Variant	rs7754927
Chromosome Location	chr6:82828054-82828055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10943857	0.86[EUR][1000 genomes]
rs13205675	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1361094	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2027245	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35213691	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4706932	0.83[EUR][1000 genomes]
rs4706934	0.96[ASN][1000 genomes]
rs6454253	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6454254	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6916279	0.96[ASN][1000 genomes]
rs7753505	0.89[ASN][1000 genomes]
rs9294244	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9341911	0.96[ASN][1000 genomes]
rs9443955	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9443961	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9449420	0.89[ASN][1000 genomes]
rs9449427	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv830715	chr6:82806657-82956327	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82825000-82828400	Enhancers	Fetal Heart	heart
2	chr6:82827400-82828400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:82827400-82829000	Enhancers	Fetal Intestine Large	intestine
4	chr6:82827600-82829000	Enhancers	HepG2	liver
5	chr6:82827800-82828200	Enhancers	Dnd41	blood
6	chr6:82827800-82828200	Enhancers	Hela-S3	cervix
7	chr6:82827800-82829000	Enhancers	Fetal Intestine Small	intestine
8	chr6:82827800-82830000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:82827800-82847600	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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